barSeed - Barley Seed Development Database

Probe CUST_22320_PI390587928

Source Contig U35_10395

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22320_PI390587928	Hv_44K_v2	TTTTGTTCTTTCTAAATCAAAGCTGTGAAACTGGAGCATGCCAATCTGGCCTGTCATCTT	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367273	3121	2e-24	3033 - 3092	100	60 / 60	plus	None
MLOC	MLOC_66417.1	3682	7e-23	2675 - 2734	98	59 / 60	plus	ABC36421
MLOC	MLOC_66417.2	3685	7e-23	2678 - 2737	98	59 / 60	plus	ABC36421
JLOC1	JLOC1_43764.4	2699	4e-23	1684 - 1743	98	59 / 60	plus
JLOC1	JLOC1_43764.3	3122	4e-23	2107 - 2166	98	59 / 60	plus
JLOC1	JLOC1_43764.2	3690	4e-23	2675 - 2734	98	59 / 60	plus
JLOC1	JLOC1_43764.1	3694	4e-23	2679 - 2738	98	59 / 60	plus
Harvest35	U35_10395	654	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_10395 654 Hv_44K_v2
GGAATACTTAAGAGGCATACAATGGGGTGCAAGGGCATCTGCATGTGCTTGGACTGCAGC
GTATTTCGTCTTCGTGCTGATAGAGCTTTTGAGTTCTCCAGGAAGCAGATGAAAGAGGCA
GACGATATTGTAGTAAACTTGCTGGAGGAGGTGGCAAGTCTTAGGAGCCTGACTGAGAAA
TCTTCTGGCCAACAGGAGCGGATGGAAGCTTGCCAGAGGGCGTTGCGGGTAGAGGAGGTG
GCCAAGGAGCGTCGGCAGCAGATGCTGGCCGAGCTCAACTCTCACTGCAAAATCCCCGGG
CCAAGGGTGAAATTCTCTCAGTACGTCGACGAAAAGATGGCCTCTTCTCCTTCCAGTAGC
AGCAGCAGGAAGCAGACCCAGTTGTGAAGACTCCGGTTACCGACCGGCGGCCACTGGTTC
CGTGCCCGATGGATGTTGGTGGCGGCGCTGAATTTTGTGCGAATTCAGCGCAGTTGAACA
CAATGGTTGATGATTAAATTATGTAGAGAGGGGGCGAAGCTTTGTTGGTCCAACTGAAGG
AAGAACGGAGAAGAGTTTGTTGTGATGTGTCTGTTGCATGTAAATCAAAGTTTTTGTTCT
TTCTAAATCAAAGCTGTGAAACTGGAGCATGCCAATCTGGCCTGTCATCTTTTT

Homology of Contig U35_10395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01170.1	677	3e-54	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None