- Probe CUST_22315_PI390587928
- Source Contig U35_46327
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_22315_PI390587928 | Hv_44K_v2 | TTTATAGTATTATTGAGCCCCTCAGCTTATGTTTGATAGGCTCCCGGAGAAGATGTTTGC | 25 | GeneList: red MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.116 | 1.676 | 1.476 | 1.284 | 0.596 | 0.413 |
Raw | 115.594 | 281.308 | 206.618 | 285.477 | 47.542 | 34.974 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_78418.1 | 1078 | 3e-21 | 733 - 792 | 97 | 58 / 60 | plus | ABC46258 |
JLOC1 | JLOC1_52267.1 | 1037 | 2e-21 | 731 - 790 | 97 | 58 / 60 | plus | |
Harvest21 | ABC46258 | 399 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus | ABC46258 |
Harvest35 | U35_46327 | 399 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus |
Contig Sequence (399 bp)
>U35_46327 399 Hv_44K_v2 TTTTTTTTTTTTTTTTTATTTTTAAGCAAACATCTTCTCCGGGAGCCTATCAAACATAAG CTGAGGGGCTCAATAATACTATAAACAAGGGATTTCAAAACATACATCATCTTTGCACCC ACTACTAAATGATCAGCTAAACTAGGCTTCAGGTTCGCTTGAAATGTTCTCGTATAAATC GCTCCCCATGCGACGGATACTTCTTCCGGATGTACTCACGGAGGCACTTCTGGTAGGAAA AATCGATCCAAACGCCATCCATGCGAACGACGAAAAGGCATCTAAACTTCCTGAACTGCG GGTGCCTGTCGACCATGATGCCGTCAAGCCCGCAGCCAACCTTATCTTCCGCGCGTGGAT GATAGGCCAGGAGCTTCTGCGCAACGACGGTTTCGTCCG
Homology of Contig U35_46327 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi3g20420.1 | 186 | 7e-51 | |
Arabidopsis v10 | None |