- Probe CUST_22313_PI390587928
- Source Contig U35_46328
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22313_PI390587928 | Hv_44K_v2 | GGCCCTGGACCCGGGGCTGGTGTACGACATCGGGGACGAAGACTACGTGGCGTTCATGTG | 56 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.862 | 1.722 | 3.445 | 1.670 | 0.537 | 0.489 |
| Raw | 67.361 | 212.047 | 358.996 | 262.398 | 33.254 | 31.333 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363314 | 2898 | 7e-23 | 2026 - 2085 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_4819.1 | 1161 | 7e-23 | 200 - 259 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_3054.1 | 1197 | 4e-23 | 195 - 254 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC46260 | 116 | 3e-25 | 57 - 116 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46328 | 116 | 3e-25 | 57 - 116 | 100 | 60 / 60 | plus |
Contig Sequence (116 bp)
>U35_46328 116 Hv_44K_v2 CCCGGGCGCGCCGCGACGCCGCTCGACTACGGCGCGGGGCAGATCGCGCTGGGCAAGGCC CTGGACCCGGGGCTGGTGTACGACATCGGGGACGAAGACTACGTGGCGTTCATGTG
Homology of Contig U35_46328 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |