- Probe CUST_22310_PI390587928
- Source Contig U35_22372
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22310_PI390587928 | Hv_44K_v2 | CATGCGGCTGTGACGAAAAAACATGCAAGTAGTTCATGCAATTAAAAGTTTTTTGTGTGT | 364 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.141 | 2.961 | 1.271 | 0.532 | 0.088 | 0.069 |
| Raw | 3904.367 | 3574.293 | 1343.027 | 876.996 | 53.394 | 44.981 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12767.2 | 738 | 2e-24 | 478 - 537 | 100 | 60 / 60 | plus | ABC32240 |
| MLOC | MLOC_12767.1 | 813 | 2e-24 | 667 - 726 | 100 | 60 / 60 | plus | ABC32240 |
| JLOC1 | JLOC1_8580.1 | 922 | 8e-25 | 662 - 721 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17373 | 486 | 3e-25 | 364 - 423 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22372 | 487 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_22372 487 Hv_44K_v2 TTAGCCATTCACAGCACAAAACACACAGACCCCAAAGTGAATTCTTCTTCTTTCTTATTA GACAAACTGATGGCAAAAATTTCGCAGATGCTTGTCACCGTCATGTGCCTTCTGCTTATG TGCAGCGGCCTTCAAGTCCATGGAGGAGAGGACGCCAACATCAGAACTAGCAGCATCCCA GTACAGCCAGCAACAAGGGTTCTACCAGCAACATATTTTCCTCAGACAACCGTATCAAGA CAGTGTGACCTATGCCACTGCAGCCATGATAACGAAAAAACTTTTTATACAACAATATGC TGTCAGGAGATAACTTGCAATGATCCTGCACATCCAAGAGCCACTTGTTTACTTCGCAGA CTCTCATGCGGCTGTGACGAAAAAACATGCAAGTAGTTCATGCAATTAAAAGTTTTTTGT GTGTATTTTTCTTTAATAAAGTGGGCATTGGTGCCAAAACATGTTTGTTTAAAAAAAAAA AAAAAAA
Homology of Contig U35_22372 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |