barSeed - Barley Seed Development Database

Probe CUST_2230_PI390587928

Source Contig U35_2990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2230_PI390587928	Hv_44K_v2	TTCATGTGAGTTCTTGCACTCACATTCCAATGTATAGCGTGAAATTCATGTATGGTTCAT	1147	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44404.7	3059	3e-22	2256 - 2314	98	59 / 60	minus	ABC07486 ABC24298
MLOC	MLOC_44404.1	2844	3e-22	1853 - 1911	98	59 / 60	minus	ABC07486 ABC24298
MLOC	MLOC_44404.5	3030	3e-22	1996 - 2054	98	59 / 60	minus	ABC07486 ABC24298
JLOC1	JLOC1_28783.2	2269	1e-22	736 - 794	98	59 / 60	plus
JLOC1	JLOC1_28783.1	2280	1e-22	747 - 805	98	59 / 60	plus
JLOC1	JLOC1_28782.2	2418	1e-22	1313 - 1371	98	59 / 60	minus
JLOC1	JLOC1_28782.1	2339	1e-22	1234 - 1292	98	59 / 60	minus
Harvest21	ABC07486	1191	3e-25	1129 - 1188	100	60 / 60	plus	ABC07486
Harvest35	U35_2990	1210	3e-25	1148 - 1207	100	60 / 60	plus

Contig Sequence (1210 bp)

>U35_2990 1210 Hv_44K_v2
ATTCCATTCCATTCGGCCATCTCATTCCGCATTCCGGTTTCCCCACGCGACGACGGCCAC
AGCTCCTCACCAACCTCCCCACTGAACCAAGCGCGCGCTCTCTCTCCGTCGATCGTATGG
TGCCCATGGTCACCGAGGCGTGGACGCTCGCCGGGTGCGGCGGGGCGGCGGCGTCCAAGC
CGGCCGCGGCGGCGCAGGAGGTGCCCGCGCTGCTGCATCCTGTCGCCAAGAAACCCACCT
CGTTGAGAGGGGTGGCCGCGGCGAGCAGCGCAGGCCAGGACGCCGCCGTCGTCGTCGGGA
GGCGCCGCGGCATCGCGTCGTCGTGCCTGCTGGCCGCGCTCGCGCTCGCCGGCGCCTCCT
CCTCGGGCGACGCCGCGCGGGCCGCCATCCTGGAGGCCGACGACGACCTGGAGCTGCTGG
AGCGCGTCAAGGAGGACAAGAAGAAGCGGCTCCAGAAGCAGGGGGTCATCAGCTCCTCCG
CCGCCGAGACAGGGTACTTGCAGGAGCTGGTGTACAAGCTGAGCAAGGTGGGGCAGGCCA
TTGACAAGGACGACCTCGCCGCCGCCGGCGACGTCCTCGGCCCCGGCTCCCACGCGCCGT
GGGTGCAGAACGTCAATGCAGCTTTCTCCAAGTTCAGCTCAAGCAGTGAGGAGAAGAGCG
CGGTCGACAGCTTCAACTCCTCGCTGTCCTCCTTGTTCACATCAGTGAGCAAGAGCGACA
TTAACTCCTCCAAGTCGGCGTTCGTGTCGTCGGCCACGGCGCTGGAGAAATGGGTGGAGC
TGGCCGGGCTCACCGGCAAGCTCAAAGGCTTCTGAATTTTCTGAGATGAGTGAATTGTTG
GCTGACGAGTACATACCTACCGGAGATGGTGTTTTCCGCCTGAAATGCCTCCCTAGAGTC
AAAGAGAATTGCAAGAATGCTCTGCCCATGATACTGATATACATGCGTTGATTCTATTGT
AAGTTCGTAACCACGGCTTCGACGGAAGAATAATCTGTTAGAATCACAATTTCCTCTGTG
CTCTGTTCCCCTTGTTGAGAAGTAAAAGACACTGTTCGTGTCAAGAAATTGTTTGCAGTG
TATTAGGACATTATAATAATAAGAAAACAATGTGTATCTGTCTGTCTAGTGCTTGTTTGC
AAAGATATTCATGTGAGTTCTTGCACTCACATTCCAATGTATAGCGTGAAATTCATGTAT
GGTTCATGCT

Homology of Contig U35_2990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None