barSeed - Barley Seed Development Database

Probe CUST_22309_PI390587928

Source Contig U35_22373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22309_PI390587928	Hv_44K_v2	AAAGCAGAGCTGAGTTGACCATCCCCGCTGCGTTAACAATGGGAATGGAGGGTCTGACGG	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369243	2111	2e-24	320 - 379	100	60 / 60	plus	ABC10985
MLOC	MLOC_52850.1	2278	2e-24	1758 - 1817	100	60 / 60	minus	ABC10985
JLOC1	JLOC1_33891.2	2273	8e-25	449 - 508	100	60 / 60	plus
JLOC1	JLOC1_33891.1	1710	8e-25	188 - 247	100	60 / 60	plus
Harvest21	ABC18618	602	3e-25	267 - 326	100	60 / 60	plus
Harvest35	U35_22373	658	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_22373 658 Hv_44K_v2
GATCAGCGGAGTTGCTGAGGCAGTACTATTACATACCCAATTGTGCAGGAGTAGAAAGGC
AAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAGGAGGAGGGACGAGCAGCGATGCAGGCGTCACTCTTCCATGCTCCCCAGGTCCGGCCC
ACAGCCGCGCCATGGCGACAACCTTCCATGCACCTACAGCTTGCTGGACGCCGGCCACAT
GGGTTGAAGCATTGTGGGGCATCGATGGAGCAGTCTCGGTTTTTGCACTCTGGAACAAGC
AGTGCGTCTGCAGCCCATGAGAAAAGCAGAGCTGAGTTGACCATCCCCGCTGCGTTAACA
ATGGGAATGGAGGGTCTGACGGCGGCCTCGTCGCCTCTCCTCATGGGCGCCATCACTCTC
GTCGGCGCAGTCCTCTACCTGCTCGGCAGAGGGAGGAAGACCGCCGGAAAAGGAGAGCTG
CCCCCAGGCCCGTCGACTCTGGAATTCCTGGCCATGTTCTTCAAGCTCCGACGCTCCGTC
TTCCACGTCGGCCCCATCCTCCGCGAGCTGCACGCGCGCTACGGCGGCATCATCTCCGTC
CGCCTCTTCCAGACGCTCGTCTTCGTCCAGGACCGCGCCATCGCGCACCGCATGCTCG

Homology of Contig U35_22373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None