barSeed - Barley Seed Development Database

Probe CUST_22307_PI390587928

Source Contig U35_22375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22307_PI390587928	Hv_44K_v2	TGCTTATGCCTGATGTCACTACCCTGTGTCTCAATACATCGTGTGTAAGTCTGATGGAAA	684	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.374	1.757	1.183	0.797	0.251	0.263
Raw	1550.391	2962.574	1777.423	1994.011	204.760	238.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76805.1	2193	2e-23	2064 - 2121	100	58 / 58	plus	ABC21686
MLOC	MLOC_76805.2	1942	2e-23	1814 - 1871	100	58 / 58	plus	ABC21686
JLOC1	JLOC1_51223.1	2081	1e-23	1959 - 2016	100	58 / 58	plus
Harvest21	ABC21686	751	3e-25	685 - 744	100	60 / 60	plus	ABC21686
Harvest35	U35_22375	751	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_22375 751 Hv_44K_v2
AATGGGCAGATGGATAGGGCTTCTATTCTGGGCGACGCGATCGAGTACCTCAAGGAGCTC
CTGCACAAGATCAGCGATCTTCAGAATGAGCTCGAGTCGTCTCCTTCCATGCCCTCGCTG
CCTGCGACGCCCACAAGCTTCCACCCTCTTACCCCGACGTTGCCGGCGCTGCCGTCCCGC
GTGAAGGAAGAGCTCTGCCCGAGCGCGCTGCCAAGCCCTACTGGCCAGCAGCCAACCGTT
GAGGTTAGGCTCCGGGAAGGCCAGGCCGTCAACATCCACATGCTGTGCCCTCGCAGGCCC
GGGCTCGTGCTTTCTGCCATGAAGGCGATCGAATCCCTTGGTCTTGATGTGCAGCAGGCC
GTCATCAGCTGCTTCAATGGGTTTGCCTTGGACGTCTTCAAGGCTGAGCAATGCAAGGAT
GGCCCTGGGCTTCAGCCTGAGGAGATCAAGGCGGTTCTCTTGCAATCTGCGGGGTTCCAT
CCCACGATGTAGGAGGGAGGGGCAACCAACCAAGTGCAGAGGATACTGCTGTATCTAAGG
AATTTCTTTTTATAACAAGTAGCGGTGTGTTTTTCGAAAGAAGCTACCTACCTCACCTTG
AGTAGTCTGAATTCGGAACCAGTTTATCTGCGAGTCTTTAGAGTCCAAAATAATGTCAGC
AATCTGTTATTAGCACTCTAGCATTGCTTATGCCTGATGTCACTACCCTGTGTCTCAATA
CATCGTGTGTAAGTCTGATGGAAAAAAAAAA

Homology of Contig U35_22375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32100.1	525	2e-82	protein\|inducer of CBF expression 1, putative, expressed
Brachypodium v1_2	Bradi4g17460.2	463	4e-72
Arabidopsis v10	AT3G26744.1	494	3e-63	\| Symbols: ICE1, ATICE1, SCRM \| basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:9832953-9834790 REVERSE LENGTH=494