barSeed - Barley Seed Development Database

Probe CUST_22304_PI390587928

Source Contig U35_22378

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22304_PI390587928	Hv_44K_v2	GCTTTGAATGTTGAATCACGCCAAAACTACTGATATTCTATTGTACCAGAGAACTATCAT	737	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.671	1.919	1.175	0.868	0.323	0.355
Raw	240.672	444.169	230.640	271.619	36.192	41.708

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66209.4	1513	2e-24	1363 - 1422	100	60 / 60	plus	None
MLOC	MLOC_66209.5	1546	2e-24	1396 - 1455	100	60 / 60	plus	None
JLOC1	JLOC1_43611.4	1105	8e-25	942 - 1001	100	60 / 60	plus
JLOC1	JLOC1_43611.3	1525	8e-25	1362 - 1421	100	60 / 60	plus
JLOC1	JLOC1_43611.2	1558	8e-25	1395 - 1454	100	60 / 60	plus
Harvest35	U35_22378	848	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (848 bp)

>U35_22378 848 Hv_44K_v2
TGTCCAGCTCCCCTGCCCGCCCGCACTCGACCTCTGCTTCGTCCTCGTCACCCCTGAGTT
CGAGGCGCCCACCAGCAAGATGCGAGCTGCCCTGCCCAAGAATGTCGCCCTCGGCCACCA
TGTCCGCAATTCCAGCCAGGCCGCTGCGCTCGTCGCTGCCGTGCTGCAGGGTGACGCCGC
ACTCATCGGTTCCGCAATGTCCTCTGACTTCATCGTCGAGCCCACCAGGGCACCGCTGAT
TCCCGGCATGGCCGCGGTGAAGGCCGCCGCTCTGGAAGCCGGAGCACTGGGATGCACCAT
CAGCGGAGCGGGCCCAACCGCTGTGGCTGTAATCGAGGGAGAGGAGAAGGGGGAGGAGAT
CGCCCAGAGGATGGTTGAGGCCTTCCTTTCAGCGGGGAAGCTGAAAGCCACCGCCACCAT
CGCACAGCTTGATAGAGATGGCGCCAGGGTTATCTCCACCTCAAGTTTTGAGTAGGAAGG
AACAGTAGCGCACAAGCAACACAAAAGCAATGAATGATATGGAATAGCAGAGATGCTGTC
GTCAAGATCAGAGGCACATGGACTTGATGTGCTTGATGGTGATGCTGTTGGGGAGAGGAG
AAACTGGATCTTGCGGCGCCAGGGCTCGTCCTCGACGAGCACCCCGTGGCGGGCCTCCTG
GACGATGGACTCCTTGGACAGGGCGAGGTCCATGTCGTCCTAGTGGAAGAGTAGGTCGTT
CTTTTGTTCATTCTCCAGCTTTGAATGTTGAATCACGCCAAAACTACTGATATTCTATTG
TACCAGAGAACTATCATTTTGTTCATTTTATGGCATAGAAAGTATTGTCAAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_22378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58510.1	379	3e-58	protein\|GHMP kinases ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g60720.1	381	2e-64
Arabidopsis v10	None