barSeed - Barley Seed Development Database

Probe CUST_22302_PI390587928

Source Contig U35_34352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22302_PI390587928	Hv_44K_v2	GGAAATGTGTTTGCTTCTTTAAGATATTTGATGTACATTGGCGTTTTGCAGCAGAAAATG	245	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.035	1.328	0.936	1.219	0.493	0.548
Raw	114.463	113.600	73.702	161.280	21.242	25.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370998	2928	2e-24	2810 - 2869	100	60 / 60	plus	None
MLOC	MLOC_57455.2	1999	2e-24	1814 - 1873	100	60 / 60	plus	None
MLOC	MLOC_57455.3	1971	2e-24	1786 - 1845	100	60 / 60	plus	None
MLOC	MLOC_57455.4	1942	2e-24	1829 - 1888	100	60 / 60	plus	None
MLOC	MLOC_57455.8	1761	2e-24	1692 - 1751	100	60 / 60	plus	None
MLOC	MLOC_57455.6	4813	2e-24	2212 - 2271	100	60 / 60	plus	None
MLOC	MLOC_57455.1	4405	2e-24	1804 - 1863	100	60 / 60	plus	None
JLOC1	JLOC1_37244.3	2283	8e-25	1833 - 1892	100	60 / 60	plus
JLOC1	JLOC1_37244.2	2117	8e-25	1667 - 1726	100	60 / 60	plus
JLOC1	JLOC1_37244.1	2036	8e-25	1586 - 1645	100	60 / 60	plus
Harvest35	U35_34352	315	3e-25	246 - 305	100	60 / 60	plus

Contig Sequence (315 bp)

>U35_34352 315 Hv_44K_v2
CCTACTAGAAGCGTGCTCGAGCGGCCGCTTTACCCGACAGATCGGTAGGGCCTTTGTCTA
TGCCGCAGCGACCTTCGTGCTCTCTTTCATGCTGGGAACTCTAGTATACTCTGTGCCAGT
ATGGGTCAAGCATTACCAATAGCTTCATGAAGTATTACAGACTTGAAGGCATTGGTGCCA
TTTTGCTGCTTGCAACATCCAAGCAGATAGTGCAATTCTCAGCATATATAGTTCGGCCTT
TCTAGGGAAATGTGTTTGCTTCTTTAAGATATTTGATGTACATTGGCGTTTTGCAGCAGA
AAATGTTTGTATACT

Homology of Contig U35_34352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None