barSeed - Barley Seed Development Database

Probe CUST_22299_PI390587928

Source Contig U35_46331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22299_PI390587928	Hv_44K_v2	TACCGACCAAATTGCTTCATCCCTTTGCCTTGTTAAGCAAGCATTATTTGACCCAAAAAA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358698	1177	3e-21	1086 - 1139	100	54 / 54	plus	ABC22222
MLOC	MLOC_25435.1	836	3e-21	2 - 55	100	54 / 54	minus	ABC22222
JLOC1	JLOC1_17378.1	917	2e-21	784 - 837	100	54 / 54	plus
Harvest21	ABC22222	504	3e-25	11 - 70	100	60 / 60	minus	ABC22222
Harvest35	U35_46331	463	3e-25	11 - 70	100	60 / 60	minus
Harvest35	U35_19354	1286	6e-22	1167 - 1220	100	54 / 54	plus

Contig Sequence (463 bp)

>U35_46331 463 Hv_44K_v2
TTTTTTTTTTTTTTTTGGGTCAAATAATGCTTGCTTAACAAGGCAAAGGGATGAAGCAAT
TTGGTCGGTAATGTACAGTACAAGTGAAGAACACGTACGGTCTCTCTTGTCAAGGCAAAG
AATGACCAGAGCAGACAGAGCAAAAGAATGAGAATGATTCTTTCTTTCTCTCTTTTCTCA
CATGCAATGCAATGCAATGCATTGCTTGCCCTATCTCTCAAATCTTTCTCATCCATGTAC
ATACATATATACCCCCGACCGGATTACCGGATCATAGCAGAAACGAGAAGAGGGCGTTGA
ATATGTTCCATGTTCTTCGTCTCTCGGTGATCTCGCTCTGGAGCTCGTCGACGAGGCCAC
CATCCAGCAGATTCATCTTGGTGGCGTCGCGGAGGGCGCCCCAGCACTCGATGCGGTTGT
ACTTCCTGGTCGAGGAGTGGAAGTGGACCCACACCCTGGCGTC

Homology of Contig U35_46331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None