- Probe CUST_22295_PI390587928
- Source Contig U35_46337
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22295_PI390587928 | Hv_44K_v2 | TAGAATTGACAGAGATCGTCGACCCAAGCCCTTGTGTAAAACAGTAAAAGATTGTTTTTT | 19 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.125 | 0.894 | 1.765 | 1.824 | 0.896 | 0.805 |
| Raw | 7.713 | 89.028 | 150.102 | 257.690 | 41.141 | 40.902 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375769 | 1235 | 7e-23 | 1135 - 1195 | 98 | 60 / 61 | plus | ABC46289 |
| MLOC | MLOC_22038.1 | 1014 | 7e-23 | 620 - 680 | 98 | 60 / 61 | minus | ABC46289 |
| JLOC1 | JLOC1_15276.1 | 508 | 4e-23 | 127 - 187 | 98 | 60 / 61 | minus | |
| Harvest21 | ABC46289 | 419 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | ABC46289 |
| Harvest35 | U35_46337 | 419 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus |
Contig Sequence (419 bp)
>U35_46337 419 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAAAAAACAATCTTTTACTGTTTTACACAAGGGCTTGGGTCG ACGATCTCTGTCAATTCTACGTACTGGCACAGTGGCAGCATCGCCTGCCGGCTCAGGAAT GTTAAGCACGACACAAAAAGAGGATGGTAATTAGGTACCATGGGGTGGTTAATTTGGCGC GCGCGCGGGCGCGGGCGCGGCTAGACCTTGTAGATGATGAGGAATCTTTGTATCACGGCG CGGCTGTCGAGCACGACGAGCTCGCCGTTGCCCATGTCCACGGAGTCGTACTGCGAGGAG CGGTGCCGGAGCGCCTGCATGTCGTCGCCGTGCGCCTGCCGGACGCGGCCGGCGATGACG CGGCACACCAGCATGGCCCTGCGGCCCGCGCCGGGCGACGGCGCGGCTCTGGCGTGAGC
Homology of Contig U35_46337 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |