barSeed - Barley Seed Development Database

Probe CUST_22280_PI390587928

Source Contig U35_32508

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22280_PI390587928	Hv_44K_v2	AAATCTTCCATCAAAGCTGATATGCATCCTCCACAGCGTCACTATGCAGTCTGATCCTGA	340	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374613	3740	2e-24	343 - 402	100	60 / 60	plus	ABC14766
MLOC	MLOC_14584.1	3673	2e-24	3392 - 3451	100	60 / 60	minus	ABC14766
MLOC	MLOC_14584.2	3664	2e-24	3383 - 3442	100	60 / 60	minus	ABC14766
JLOC1	JLOC1_9957.2	3812	8e-25	274 - 333	100	60 / 60	plus
JLOC1	JLOC1_9957.1	3666	8e-25	221 - 280	100	60 / 60	plus
Harvest35	U35_32508	433	3e-25	341 - 400	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_32508 433 Hv_44K_v2
GTTTTCCTCTCCTCGGGAGCTGCTCCGTCCCTCCTCTCCCCCCTCCCACCCTCGCCGGCG
ACCCGCCGATGCCACCCGGGCGGCGGCGGCGGAGGCGGGGGCACCAGTGACCGCGGCCGT
GCGCGGCGCGGACGATGGCGGCGCCGGAGGGCTCTGGCGCCGGCGGCGGGGAGGGGCCCA
GGGGGAGCAGGGTGAACCAGGAGCTGTGGTACGCGTGCGCGGGGCCGCTGGTGGCGCTGC
CGCCGCCGGGGAGCCTCGTCGTCTACTTCCCGCAGGGGCACAGCGAGCAGGTCGCAGCAT
CTATGCGAAAGGATGCAGACGCGCAGATTCCAAGCTATCCAAATCTTCCATCAAAGCTGA
TATGCATCCTCCACAGCGTCACTATGCAGTCTGATCCTGAGACGGATGAAGTTTATGCTC
GGATGACTCTCCA

Homology of Contig U35_32508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None