barSeed - Barley Seed Development Database

Probe CUST_22271_PI390587928

Source Contig U35_20532

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22271_PI390587928	Hv_44K_v2	CACAAACACGGTTTTTTGCGAGTTTCCAGATGTGCCATGCTCAAATCTGTAGTCAATGTC	616	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	12.629	8.199	1.104	0.793	0.901	0.802
Raw	96.917	106.715	11.529	12.631	3.448	3.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4845.1	1131	8e-25	841 - 900	100	60 / 60	plus
Harvest21	ABC12545	707	3e-25	32 - 91	100	60 / 60	minus	ABC12545
Harvest35	U35_20532	707	3e-25	617 - 676	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_20532 707 Hv_44K_v2
CTGAGCCCGCAGCAGCACATGACGACGGCGTGCAAGCCCCACGCCGTGCAGGCGCAGCCG
GCGGCGCCCTCGCCGCCCAGGTCTTCGCTCCGGCCAGCTTTCCTCCGCAACCCAGTAACT
GTGTGCTCGGGACCGGCGTCGCGAATGGCGGTCAGGAGGAGGTGCCAGGAAGAGAAGAAG
CAGCAGCAGCAGAGCGGTGACGGCGGCGACGGCGGCGAGAAGAAGAAGCAGCAGCAGCAG
GAGAAGCGGACGTTCCTTAGCCTGGAGGAGGCCGGGCTGGTGGAGATGTCCGGGCTCAGC
ACCCACGAGCGCTTCCTCTGCCGCCTCACCATATCGTCGCTGAACCTGCTGCGGGTGATA
TCGGAGCAGGAGGGGGTGGCGATCGAGGAGCTCAACGCCGGGCGGGTGTGCGACTGGTTC
CTCAAGGACAAGCTCAAGCAGGAGCAGAACCTCGGCACCGCCGTCCTGCAGTGGGACGAC
CCACCGCCCATCTAAATTGAATTCCAACCGTCTCATTCTCATCTTAGTACTAATTTGTTA
TTAGAGCTTGTTGCTAGCTCAACCCATCTGTCAGTTCATCAGCACGTTACAACGCCCAGG
GCAAGACAAACACAAACACAAACACGGTTTTTTGCGAGTTTCCAGATGTGCCATGCTCAA
ATCTGTAGTCAATGTCATATATTTTTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None