- Probe CUST_22267_PI390587928
- Source Contig U35_20536
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22267_PI390587928 | Hv_44K_v2 | GCACCTATGTATTCATCATTATGTTGTACCTCCATTGCAATAAAGCTCACTGATTGTGCC | 383 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.063 | 0.079 | 1.097 | 2.005 | 1.014 | 1.563 |
| Raw | 58.694 | 116.804 | 1444.490 | 3831.183 | 753.341 | 1271.013 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67023.1 | 653 | 9e-22 | 588 - 645 | 98 | 57 / 58 | plus | None |
| JLOC1 | JLOC1_44212.1 | 582 | 5e-22 | 523 - 580 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC13182 | 443 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20536 | 443 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus |
Contig Sequence (443 bp)
>U35_20536 443 Hv_44K_v2 AAAACCACACCACAGCTTTCCTGCTTCTTCTGCTGCAGATTTCCAGTTTCAGGCCTCGGG GAGATGGGTGACGCCAAGTCGTCGTGGCCGGAGGTGGTTGGGGCGCCGTCCGAGGTGGCC AAGCGGAAGATCCTCAGCGACCGCCCGGACGTGCGCGTGCTCGTGGCTCCCGTCGGCTCC ATGGTCACCACCGACTTCGACGACAAGCGCGTCCGCGTCTTCGTCAACACCCGCGGCGAC GTTGCCCAGGTCCCAAGCATCGGCTAGGCCGGCCGAACGCGCTCCATTATGCATAGTGCT AGGGTTCCCGGCATGCATGCATCGCCATGGTTCGTGCGGCCGGGTGTGTTAGCAGCCAAG ATTATTATGTATTGTCCGCGTACGCACCTATGTATTCATCATTATGTTGTACCTCCATTG CAATAAAGCTCACTGATTGTGCC
Homology of Contig U35_20536 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |