barSeed - Barley Seed Development Database

Probe CUST_22263_PI390587928

Source Contig U35_32510

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22263_PI390587928	Hv_44K_v2	TTCGAATTGGGGATCTCGCGTCCCAACCAAACCCGCTCCAAACCTAGGGTTCCGCCGACC	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58250.3	696	2e-24	18 - 77	100	60 / 60	plus	None
MLOC	MLOC_58250.1	2913	2e-24	2757 - 2816	100	60 / 60	minus	ABC10547
JLOC1	JLOC1_37824.1	3006	8e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_32510	473	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_32510 473 Hv_44K_v2
ATCGTCTTCGAATTGGGGATCTCGCGTCCCAACCAAACCCGCTCCAAACCTAGGGTTCCG
CCGACCCGCCGTCTCGCCGACCGCTCGCCGGCGCCGGCGCCATGTACAACGGCATCGGGC
TGCAGACCGCGCGCGGGTCCGGCACGAATGGGTACGTGCAGACCAACAAGTTCTTCATCC
GCCCCCGGACCGACGGGGCCGCCAAGGCGCCGCTCCACAACTACGACCACGACCCCGGCC
GCGACAAGCCCGGCGGGTTGCGGCCGCCCAACAAGGAGATCCTGGAGCACGACCGGCGGC
GGCAGGTGGAGCTGCGGCTGGTCGAGCTGAGGGGCACCCTCGAGGAGCAGGGCTACACCG
AGGGCGAGATCGAGGAGCGCGTCGAGGAGGCGCGCAAGGAGGCCGCTGCCGCTGCCGTGG
CCGCGGAGGCGGGTGGTCGCGCAGGCGGCGGNGGCCCAGCACCCGTCCTGGCG

Homology of Contig U35_32510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None