barSeed - Barley Seed Development Database

Probe CUST_22259_PI390587928

Source Contig U35_32514

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22259_PI390587928	Hv_44K_v2	ATGTTGACACGTCCAAAGTGGTGAAAGCTGATGCTGATGGTGTTATAGTTGGTGCTTCAG	388	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.150	1.426	1.436	0.980	0.590	0.466
Raw	1745.499	3242.373	2928.853	2991.117	664.328	575.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56349.2	1640	2e-24	234 - 293	100	60 / 60	plus	None
MLOC	MLOC_56349.4	1086	2e-24	81 - 140	100	60 / 60	plus	None
MLOC	MLOC_56349.3	1593	2e-24	96 - 155	100	60 / 60	plus	None
MLOC	MLOC_56349.1	1523	2e-24	165 - 224	100	60 / 60	plus	None
JLOC1	JLOC1_36438.1	2102	8e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_32514	448	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (448 bp)

>U35_32514 448 Hv_44K_v2
AGAGTCTCCGCCCGTTCCTCCACCCCCGCCCCACCGCTCCACGCCCACGCCCGCCCCTCC
GCCGCGGCCGGCCCGACCCGAGGCGCCGCGCCCACCGCGATGCCGTCTTCCTCCTCCGCG
CCGACGACGACGACGCCGCCCGCCGAGGAGACGACCGCCGCCGCCGCCAGCGGGTTCCGC
CTCACCGAGCCCTCCTTCCTCGAGTCCCTGATGCCGAAGAAGGAGACCGGCGTTGACCGC
TTCCTCGCCGCGCACCCCGAGTACGACGGCCGCGGCTCGCTCATCGCCATCTTCGATTCT
GGAGTTGATCCGGCTGCAGCTGGGTTGCAGAAAACTTCTGACGGGAAGCCCAAGATCCTT
GATGTTATTGATTGCACGGGTAGTGGTGATGTTGACACGTCCAAAGTGGTGAAAGCTGAT
GCTGATGGTGTTATAGTTGGTGCTTCAG

Homology of Contig U35_32514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None