barSeed - Barley Seed Development Database

Probe CUST_22252_PI390587928

Source Contig U35_32518

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22252_PI390587928	Hv_44K_v2	CTTTTCTTTTGTCGGGTACCAAGGTCCAAGATGGGTCATGCAAGATGCTTGTTCAACAGT	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34557.1	3950	7e-23	2580 - 2640	98	60 / 61	minus	ABC09357 ABC14714
JLOC1	JLOC1_22296.1	3892	4e-23	1210 - 1270	98	60 / 61	plus
Harvest35	U35_32518	476	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_32518 476 Hv_44K_v2
GTGGGAAGCTCTTCAAGATACAACTCTTATAATTCTTGCTATCTGCGCCTTTGTCTCGTT
AGTTGTTGGCATTACGATGGAAGGATGGCCAAAAGGTGCTCATGATGGTCTAGGAATTGT
TGCAAGTATCCTCTTGGTCGTTTTCGTTACCGCGACAAGTGACTATCGGCAGTCGCTGCA
ATTCAAGGACCTGGACAAGGAGAAAAGAAAAATTCAAGTGCACGTTACAAGGAAAGGTTT
CAGGCAAAGAATATCAATATATGATCTTCTTCCTGGAGATGTCGTCAATCTGGCAATCGG
AGATCAGGTTCCTGCTGATGGGCTCTTCATTTCTGGGTTTTCTCTGTTGATTAGTGAGTC
CAGCCTAACTGGTGAGAGTGAACCTGTTGTGGTAAATGAAGAAAACCCTTTTCTTTTGTC
GGGTACCAAGGTCCAAGATGGGTCATGCAAGATGCTTGTTCAACAGTTGGTATGCG

Homology of Contig U35_32518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39660.1	1021	7e-82	protein\|calcium-transporting ATPase, plasma membrane-type, putative, expressed
Brachypodium v1_2	Bradi4g03130.1	1020	7e-85
Arabidopsis v10	AT2G22950.1	1015	1e-75	Cation transporter/ E1-E2 ATPase family protein \| chr2:9766127-9769766 FORWARD LENGTH=1015