barSeed - Barley Seed Development Database

Probe CUST_22248_PI390587928

Source Contig U35_18227

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22248_PI390587928	Hv_44K_v2	AATAAAGTTGATGGGAGTAGCACTAAAGATCCTTCCAAGCCAGCTTCTAGCATACCAACT	913	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.554	0.632	1.169	1.667	1.111	0.906
Raw	99.725	161.466	284.669	632.646	150.415	133.823

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52836.4	1582	2e-24	691 - 750	100	60 / 60	plus	ABC18921
MLOC	MLOC_52836.2	1982	2e-24	1355 - 1414	100	60 / 60	plus	ABC18921
MLOC	MLOC_52836.1	2798	2e-24	1907 - 1966	100	60 / 60	plus	ABC18921
JLOC1	JLOC1_33880.3	1971	8e-25	807 - 866	100	60 / 60	plus
JLOC1	JLOC1_33880.2	2139	8e-25	975 - 1034	100	60 / 60	plus
JLOC1	JLOC1_33880.1	2164	8e-25	1000 - 1059	100	60 / 60	plus
Harvest21	ABC09044	1002	3e-25	909 - 968	100	60 / 60	plus
Harvest35	U35_18227	1007	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (1007 bp)

>U35_18227 1007 Hv_44K_v2
ATCGGGTTTGTCTAANAAAAAGAAAATCTCTCCTCTCTCCTGAACACTCGTATCAGTCGG
CTGCCCACCGTCGCCGGTCCAAGAAGCCGCCTGCTCGTCGGCTACTCCGCCGCCCCGCTC
CCCCCTCCCTCCGGATCCACCTTCCCCTCTGTAGATGGAAATCACAATTAATTCCTTGAC
GTACAAGGGTTCGATTCCAGATGCAATTAATCAATCAAGAAGGGAGAAAAAACTCTTTGT
AATTTACATATCAGGTCAAGATGAAACCTCAAGTAATTTGGAACAGTCTACATTGGTTGA
TGAACATGTGGCTGCAGTGATAAGCAGATGTTGTGTGTTCTTGCAACTAAAACAGGGCGA
TGTTGATACGCTTCAATTTTCAGCTATCTATCCACAGAAGTCTGTCCCAAGTATATCTGT
CATCGGACTGAATGGTGCTATGCTATGGAATCATGAGGGGTATATTAGCCCAGAAGATCT
TAAGGAAAGCATTGAGAAAGCTTGGGCTGCCCTTCATCTGCAGGAGACAGCGGCCACCCT
GTTAACTGCATCACTTGCTTCAAGAATGGCTGAACCTGCAAATACTGCTTCTTCAACCAT
GCCTGCTCAAGAAGGTTCATCTACTTCAGAAAATCATTCCAATTCATCAGGTCAATCCTC
AGAATCTTCTGCAGTCCGTGGATTTGCTAATTCTACTAATTTGGTAGCACAACCACCTAG
TAGCACAAGCCAAGCTGAACTTCTCAAGACAAGTGAAATCCCCAAATCAGATTCAGCTTC
ATGCAACATAGCTGTTGAGGAAAAGCTAGATTCAGCATGCCAGGCTGTGTTGCCAGATTT
TTCAGCGAGCTCAAATATAGAGAATTCCACAGAGCCAAATCAGACAGTTAGTACGCCCAA
ACCAAAAAGTAAGAATAAAGTTGATGGGAGTAGCACTAAAGATCCTTCCAAGCCAGCTTC
TAGCATACCAACTNAGGAGTACCTCAACAGTTGCCTGTGGAACAAGA

Homology of Contig U35_18227 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g18880.1	536	4e-78	protein\|UBX domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g20210.1	623	2e-93
Arabidopsis v10	None