barSeed - Barley Seed Development Database

Probe CUST_22247_PI390587928

Source Contig U35_18228

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22247_PI390587928	Hv_44K_v2	GATGTGAGACAAGCACCCATAATAATAAAGAGATACGTGCATCATGCTCCGTATCTGTTC	1550	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.084	2.046	1.033	0.775	0.241	0.266
Raw	342.722	522.540	234.558	277.104	29.673	36.562

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358908	1882	7e-23	1715 - 1775	98	60 / 61	plus	ABC09006 ABC38381 ABC39124
MLOC	MLOC_59287.1	2342	7e-23	43 - 103	98	60 / 61	minus	ABC09006 ABC38381 ABC39124
JLOC1	JLOC1_38569.2	2131	2e-21	2074 - 2131	98	57 / 58	plus
JLOC1	JLOC1_38569.1	2135	2e-21	2078 - 2135	98	57 / 58	plus
Harvest21	ABC09006	1766	3e-25	1690 - 1749	100	60 / 60	plus	ABC09006
Harvest35	U35_18228	1635	3e-25	1551 - 1610	100	60 / 60	plus

Contig Sequence (1635 bp)

>U35_18228 1635 Hv_44K_v2
GCGGGAAGGCGTACGCGACGCCCGGGGAGCGCGCGGCGCGGCTCGCGGCGTTCGCGGAGA
ACGCGGCCTTCGTGGCGGCCCACAACGACGCGGTGGCCAGCAGCGGACCGGGAGGGCCGT
CGTACACGCTCGCGCTCAACGCCTTCGCCGACCTCACCCACGACGAGTTCCGCGCCGCGC
GCCTCGGCCGACTCGCCGTCGGCCCGGGCCCACTCGGGGCGCCTTCGCCGTCGGACGGGG
GCTTCGAGGGCCGCGTGGGCGCCGTGCCCGACGCGCTCGACTGGAGGCAGAGCGGCGCCG
TCACCAAGGTCAAGGACCAGGGCAGCTGCGGTGCTTGTTGGAGCTTCTCAGCTACAGGTG
CCATGGAAGGAATAAACAAGATCACGACGGGCTCTCTTCTCAGCCTTTCTGAACAGGAAC
TAATCGATTGTGACAGATCTTACAATACTGGTTGTGGCGGTGGGCTTATGACCTATGCTT
ATAAGTTTGTGATTAAAAATGGTGGGATTGACACGGAGGATGATTACCCGTTTCGTGAAG
CAGATGGAACATGCAACAAGAACAAACTGAAAAAGCATGTGGTAACAATCGACGGCTACA
AGGAGGTGCCTTCTAGCAAGGAAGACTTGTTACTACAAGCTGTTGCCCAGCAACCTATTA
GTGTAGGAATATGTGGCAGCGCTAGAGCGTTTCAGCTATACTCCCAGGGTATCTTTGATG
GTCCGTGTCCAACGTCTCTTGATCATGCAGTCCTAATTGTGGGATATGGTTCTGAAGGTG
GCAAGGATTATTGGATTGTGAAAAATTCTTGGGGTGAAAGATGGGGAATGAAGGGCTACA
TGCATATGCATAGAAACACTGGCTCATCGTCAGGTATCTGTGGCATAAACATGATGGCAT
CGTTCCCTACAAAAACAAGCCCGAATCCTCCCCCTTCACCAGGCCCTGGCCCAACCAAAT
GCAGTGTTTTTACCTCCTGCCCTGAAGGATCCACCTGCTGCTGCTCCTGGCGAGCCTTGG
GATTCTGTCTTTCCTGGAGCTGCTGTGAACTAGATAATGCAGTTTGCTGCAGCGATAACC
GTTCTTGTTGCCCCCATGACTATCCTATATGTGACACAGCTAGGGGGCGTTGCTTGAAGG
GTAATGGCAACTTCTCCAGTATAGAAGGAATCAAGAGGAAGCAAGCTTTCTCCAAGGTCC
CCTCTTGGAATGGTTTGTTGGAACTGTTGGATCAGTGAGCATACAAAGAAGGGATGGATC
ACAGACAGATACACATGTATGCACGGTCTTATACAAGTGGCGGGGTTCACTGCGTTCTTC
AAGTACCCTGCCACCTCTAGCTGCTGGTTGCCTTGCAAGGAGATGTCTAATGAGTTGAAT
GAAAAACAGAGATGTCCAGTACTCGAGATTGTAGTGTACACTCGTGAATCACGCAGCTGG
TACTGTATTATTGTATTGTGTTTTTATGATTGTACATGTCGGATTAGCCTATGATGGGTT
CGGTGAGATTTTCTTTACACGGATGGTCTATTTTTACTCAGCTTGTATTAGATGTGAGAC
AAGCACCCATAATAATAAAGAGATACGTGCATCATGCTCCGTATCTGTTCAAAAAAAAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_18228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43230.1	451	0.0	protein\|oryzain alpha chain precursor, putative, expressed
Brachypodium v1_2	Bradi2g20460.1	462	0.0
Arabidopsis v10	AT1G09850.1	437	1e-165	\| Symbols: XBCP3 \| xylem bark cysteine peptidase 3 \| chr1:3201848-3203875 FORWARD LENGTH=437