barSeed - Barley Seed Development Database

Probe CUST_22246_PI390587928

Source Contig U35_18229

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22246_PI390587928	Hv_44K_v2	TGACAAAATATGATTTTGAGGCCGACTGCTTTAGTTCTCCTTTTGACGATGTGAATAAAA	446	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.321	0.289	0.933	2.123	1.457	1.248
Raw	15.477	21.845	63.114	214.368	53.574	50.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362311	1481	2e-24	497 - 556	100	60 / 60	plus	ABC09723 ABC44794
MLOC	MLOC_54354.1	1492	2e-24	642 - 701	100	60 / 60	plus	ABC09723 ABC44794
JLOC1	JLOC1_34983.1	1807	8e-25	642 - 701	100	60 / 60	plus
Harvest21	ABC09722	746	3e-25	447 - 506	100	60 / 60	plus
Harvest21	ABC09723	1360	6e-22	373 - 432	97	58 / 60	plus	ABC09723
Harvest35	U35_18229	629	3e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_18230	1382	1e-23	373 - 432	98	59 / 60	plus

Contig Sequence (629 bp)

>U35_18229 629 Hv_44K_v2
CTCCCGCCGCCGGCTTCGCATCTCCGGCGCCACCGCCACCGCCTCCGCCGCCGTCCTCCT
CCGTGGTAGGATCCTCCGAGCTCGTGCGCCCCGCCACGCCTGCCTGTTCGTCTTCGAACC
GCCATCCGTCAGGTGCCGAATGGAGGAGGTTGTCTCCGCTTCAGCTAATAGCCAAAATTC
GACTGGTGATGCCGCGGCAGATCAGCCTATCAACGTGTACGTGTGGGACTTGGATGAAAC
ACTTATTCTGCTCAAGTCCCTGCTAGATGGGTCGTTTGCTGGGCATTTTGAAGGCCTCAA
GGACCATGAAAAAGGTACTGAAATAGGGAAGCGCTGGGAGAACATCATTCTTGAACTCTG
CGATGAGCACTTCTTCTATGAGGAGATTGAGAACTACAATCAACCCTATCTCAGTGCTTT
ACATCAGTATGATGATGGGAAAGACTTGACAAAATATGATTTTGAGGCCGACTGCTTTAG
TTCTCCTTTTGACGATGTGAATAAAAGGAAGCTTGCCTACAGGCATCGTGCTATTGGAGA
CAAGTATGAAAAGGGTTTGCAGAAAATTCTGGACCACCGCATGTTCAAAGTCTGGAGTGA
TTTGTATAGTTCGACAGACAAATATACTG

Homology of Contig U35_18229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02028.1	300	3e-86	protein\|eyes absent homolog 4, putative, expressed
Brachypodium v1_2	Bradi1g51790.1	305	4e-93
Arabidopsis v10	AT2G35320.1	307	1e-57	\| Symbols: ATEYA, EYA \| EYES ABSENT homolog \| chr2:14867074-14868387 REVERSE LENGTH=307