- Probe CUST_22245_PI390587928
- Source Contig U35_20540
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22245_PI390587928 | Hv_44K_v2 | AGCGCTTGCGAACGTTGCATTTTTTATTAGATATGTTGCAAAAGGTCGGTGCGTTCGCAG | 314 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.860 | 2.111 | 1.780 | 0.909 | 0.243 | 0.094 |
| Raw | 1843.262 | 7073.813 | 5118.413 | 4232.266 | 384.598 | 159.394 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_19285.1 | 465 | 8e-25 | 326 - 385 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02227 | 1901 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | ABC02227 |
| Harvest35 | U35_20540 | 418 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus |
Contig Sequence (418 bp)
>U35_20540 418 Hv_44K_v2 CCGAACAGTAAAAGAAGAGAGCATATCAGTACATAGCTAGCACCGTATCTTGTGATGGCC GTCAGTACAACAAGTGCATGCTTTGTATGCTTGGCAGCCCTTATGGTGGTGATGGCCACT GTGATGTTGTCCTGTGATGCTGATCCAAAAGAATGGTGCTCAGGGCTTGAAGATGGATGC ACCGAAGACAAGTGCAAGGGTTGGTGTGAAGGCAGGGGTTACACCAAGGGAATTCATTGC CAGGACGTCGCCACTTGTTGTTGTAGGAGGACTGCGACCAAGCCCATGGTGGATGTTGTC CGTGGTCGTGATTGAGCGCTTGCGAACGTTGCATTTTTTATTAGATATGTTGCAAAAGGT CGGTGCGTTCGCAGCGGGTAATAAATAAATAAATTTTAAAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_20540 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |