- Probe CUST_22242_PI390587928
- Source Contig U35_20543
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22242_PI390587928 | Hv_44K_v2 | CAAGACTTTCACTGGGAAGTTATGTAGAACAAAAAATTAATACTCCCTCCGTCTGAAAAT | 365 | GeneList: yellowgreen MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.059 | 3.129 | 2.571 | 1.125 | 0.099 | 0.039 |
| Raw | 688.586 | 3330.501 | 2232.910 | 1581.581 | 49.830 | 20.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC12631 | 478 | 3e-25 | 366 - 425 | 100 | 60 / 60 | plus | ABC12631 |
| Harvest35 | U35_20543 | 478 | 3e-25 | 366 - 425 | 100 | 60 / 60 | plus |
Contig Sequence (478 bp)
>U35_20543 478 Hv_44K_v2 GCAATCATTCTTCAGTGAGACTTCTTGTTGACACCACATCTAAGCTAACATGAGGATTTC TCTAGCGCTTCTCCTGACCCTTACAGTCCTCTTACTGGCATCAGATGTGGAAGCAGATTG TACGACATCAATTATCAAACGTCCAAATAAGTGCTCGAACGCTATTTGCGAGCAGGCTTG CGACGCAAGGCGCCAGACGATCTGCGGCGAACAATGTCGTCTTCAGAAGGCCAGTTGTGT TGGAACGTTATGCGGATGTACCTGGTGCACATAGTTGTACTCCCCTAGTTAATTAAGCTC CCTGTAAAGGGAAGTATGATCATTAGAAAAAAATTATTGCAACGCCACAGTATACAGTGC GGCAGCAAGACTTTCACTGGGAAGTTATGTAGAACAAAAAATTAATACTCCCTCCGTCTG AAAATAATTGTCTTAAAAATACATGTATCTGTTGAAGCCGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_20543 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |