barSeed - Barley Seed Development Database

Probe CUST_22241_PI390587928

Source Contig U35_20544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22241_PI390587928	Hv_44K_v2	AAGTTAGCTTGAGGTATGGAATTTGGGGAGGCAGCTCAAACACAAGACTATTATCTTTAG	1068	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.664	1.600	1.228	0.873	0.402	0.441
Raw	11136.383	16984.560	11329.440	12718.450	2041.173	2450.083

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250388.1	1285	2e-24	1105 - 1164	100	60 / 60	plus	None
MLOC	MLOC_1517.1	738	2e-24	420 - 479	100	60 / 60	plus	None
JLOC1	JLOC1_928.1	1464	8e-25	1126 - 1185	100	60 / 60	plus
Harvest21	ABC12518	1128	3e-25	1069 - 1128	100	60 / 60	plus
Harvest35	U35_20544	1128	3e-25	1069 - 1128	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_20544 1128 Hv_44K_v2
CGCCTCCTCCCCGACCCCGACGCCCCCCTTCTCGCTCCCGCGTCTCTCCGGCGGCCACCG
ACCCTCTCCGGCGATGTCGGTTCCCCGTAAGCAAGCGAAAATGGTGGCGCTCGAAAAAGA
AGAGGATCCCTTGGTCCACGACGAAGCCATGATGGATGACGACGATACTGACGACGACTA
TGTGGAGTCGGAGGACGACGATTCAGAGGAGGAGTTGCAGGCCGAACCTTCGAAGAAGGC
CGTGTACAACAAGGAGGGGCTCCTCGAGAAGCTCGAGGACATCGCCTGGCCGGAGGATGT
GGACTGGATGCACAAGCTCACCGTCGACCATGACCAGGGGGAGAAGGTCGATGTGAACGA
CGATCTGACCCGCGAGCTCGCCTTCTACACCCAGGCCTTGGACGGCACGAGGCAGGCCTT
TGAGAAGCTGCAGTCCAGGAAGGTCCGGTTCCTCAGGCCCGCGGATTACTACGCGGAGAT
GGTCAAGACCGACTCTCACATGCACAAGATCAAAGGGAAGCTCCTGTTCGAGAAGAAGAA
GATTGAGGAGGCCGAGGAGAGGAAGAAGGCGCGCGAGTCGAAGAAGCGATCGAAGGAGGT
GCAGGCAGAGAAGCTCAAGGAGAGGGCCAAGGAGAAGAAGGAGAGCATCGAGTCGGTCAA
GAAGTGGAGGAAGCAGAGGCAGCAGGGGGGATTTTCCAAGGGGAATGAAGACGGCCCAAA
CCTCAACTTTGAAGTTGAAGAGGGACTCAAGCAACACAAGAAGCAGAGGCCTGGCGTCTC
TCCCGGTGATAGGTCTGGTGGTCGTGCTAAGCGAGGTAAGCAAGGAAAGAACCATAGGTC
AAAGGATTCCAAGTTTGGGCATGGCGGTCGCAAAGGGATGAAGAAGCAAAACACTGCTGA
GACGACGAATGACTTCAGAGGGTTTAACAACCAGAAGGGCGAGTCAGGAAACAAGAAGAG
GAAGATGTTTTGATACGGTGTTGTAAGAGTCTGTGCCTGCTTCCTTGTGACACTATTATA
TTCTTGTCTTTATGTTATTTTGCTGCAGTACTCTATCACTAGATGCAAAAGTTAGCTTGA
GGTATGGAATTTGGGGAGGCAGCTCAAACACAAGACTATTATCTTTAG

Homology of Contig U35_20544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29320.1	292	4e-114	protein\|rRNA-processing protein EBP2, putative, expressed
Brachypodium v1_2	Bradi1g04477.2	302	7e-122
Arabidopsis v10	None