barSeed - Barley Seed Development Database

Probe CUST_22239_PI390587928

Source Contig U35_20546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22239_PI390587928	Hv_44K_v2	GTAGCAAGATCTTGCGTCCTTTGTATACTCTGTATCTTAATACAGTACTACTCTGTTTTT	658	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.506	7.200	1.339	0.682	0.498	0.444
Raw	132.092	168.086	25.338	22.499	2.973	3.081

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370491	803	2e-24	687 - 746	100	60 / 60	plus	ABC12793
MLOC	MLOC_37998.1	536	2e-24	350 - 409	100	60 / 60	plus	ABC12793
JLOC1	JLOC1_24659.1	569	8e-25	349 - 408	100	60 / 60	plus
Harvest21	ABC12793	743	3e-25	659 - 718	100	60 / 60	plus	ABC12793
Harvest35	U35_20546	743	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_20546 743 Hv_44K_v2
CAGAAACGCTCGGCGCCATGGCCATGGCTTCCACCGCCCTCTCCTCGGCCGTCTGGCCCC
TCCACAGCAAGCCCGCCGCCTCCTCCCTGACCCGAGCACACTCGTTCTTCCCCGTCCACG
GCCGCCGCCGCTCCGTCGCCGTCGCGTGCACCTCCACGGCCACTGCCTCCCCGAAGGTGC
TGGAGCTGGGGGACGCCATCGCGGGGCTGACCCTGGAGGAGGCGCGCGGGCTGGTGGACC
ACCTGCAGGAGCGCCTGGGCGTGTCGGCGGCCTCGTTCGCGCCCGCCGCCGCCGTGGCCG
CTCCGGCCGGGCCGGCGGCCGAGGCGGAGGCGCCCGCGGAGCAGACGGAGTTCGACGTGG
TGATCCAGGAGGTGCCGAGCAGCGCCCGCATCGCGACCATCAAGGTGGTGCGCGCGCTGA
CCAACCTGGCGCTCAAGGACGCCAAGGACCTCATCGAGGGCCTCCCCAAGAAGCTCAAGG
AGGCCGTCGGCAAGGACGAGGCCGAGGACGCCAAGAAGCAGCTCGAGGCCGTCGGCGCCA
AGGTCACCGTCGCCTGACCTTGACGGCGTTGCCGCTACACTGCTACTAGGAGTTCCAGAA
TTTTACCAGAATTTTCCTTGTCGAAAAGACATTTCTCTTGTGTAATTGTATCCGGCCAGT
AGCAAGATCTTGCGTCCTTTGTATACTCTGTATCTTAATACAGTACTACTCTGTTTTTTT
GCCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None