barSeed - Barley Seed Development Database

Probe CUST_22237_PI390587928

Source Contig U35_20548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22237_PI390587928	Hv_44K_v2	CATGCATGTGCACATGGATTGATTTTCTATGCCTGTATTCCAGTTCCAAAAGATAAAAAT	1271	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.279	1.796	1.832	0.884	0.373	0.379
Raw	187.711	394.889	346.876	263.339	39.240	43.913

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55190.1	1564	2e-24	1448 - 1507	100	60 / 60	plus	None
JLOC1	JLOC1_35589.1	1458	8e-25	1305 - 1364	100	60 / 60	plus
Harvest35	U35_20548	1406	3e-25	1272 - 1331	100	60 / 60	plus

Contig Sequence (1406 bp)

>U35_20548 1406 Hv_44K_v2
AAGAGAATCATCCTTGTGCTTGTGAACCAACCCAACCCAACCCAACCCAACCCAACCATC
TTGCTCCGTTCCGTTCCATGGCGTCTCTGCTTCTCAAGGGCGTGCACAAGCGGCTGGGCC
TGCCCTCCATCTCCATCTCCTGCTCCTCCGCAGACGCCACCAACATCATCGCCTCCACAG
GCACCGTCGCCGGCGTCGGCAGCAGCAGCGGCCGGGCCATCGACCGCCACTCTCCGCGCC
TCCGCGACCCGCACCGATCCTCCACCTCCAAGCCGCCCAGGCCAAGCACCAGTAGCATCA
CCACCAAAGGCTCGGCGTCGTTAGAGGACACCAAGATGCAGCAGAACGGCCATGGCAGCA
AGAAGAAGAAGAAGAAGAAGAGCACCACCGCTGCTGCTGCTGGGATTACTGGCGCCAGTA
GCAGACCTTCGGCGAAGAGGCTGGTCAGCCCGGCCACGTCGTCCAGGTTCCTCCTCAACT
CCTCCCGCCTGCTGTCCGACGACCTCGACGTCCTCGCGCTGCCCCCTCCCCCGCCGCCGT
CCTTCATCGACGTGCTCCCCGGAGGCGAAGGGAAGACACCGTCCTTCGTCGACGCGTTCC
CCGCTGACCTCTCCCTGCCGGCTCCCTTTGCCAAGGAGGCACCGCCGTCGACCGTGCACC
AAGCAGAGTCCTCGTCGTCGTCAGGGACGTCCTCTGCTTCGTCGTCGTCGGAGATCTCCG
CCGTCCAAGAAGAGGAGCAGCAGGAGAAGGCGGCGGTGCTGGCGCGGTCGTCCTCCTCCA
CGACCACGGAAAGAAGAAGGACGACGCAGGTGGTGGTGGTGCTGCGCGTGTCGCTGCACT
GCAAGGGGTGCGCGGGCAAGGTGAAGAAGCACATCGCCAAGATGGAGGGCGTGACCTCGT
TCGACATCGACATCGCGAGCAAGAAGGTGACGGTGGTCGGCGACGTGACGCCGCTGGGCG
TGCTCACAAGCGTCTCCAAGGTCAAGCCCGCCCAGTTCTGGCCGTCGCAGCCGTGCCCCC
CGCGCGCATCCGCCTCATTCTGAACGCGCCAACCAGCGATCGATATCCGCTTTCTCTGAA
CCACAAGTAGATTGATACGGCGTCCTAGCTAAGCTGGTCGAGTGGTCGTCCATGGCGGAT
CACTCGCTCCCCGGCGATGGAAGTAGGTGGTAGAACCTCGATCGACGGCTGCCACGCACG
CACGTAGTAGCTCCATATTTCTTTTCATTGAACTTGGAAGAAACGGCATTGAAGCTCCTC
GTCTTGGCATGCATGCATGTGCACATGGATTGATTTTCTATGCCTGTATTCCAGTTCCAA
AAGATAAAAATAAAAAAAATTCTATGATTGTATTCTGTATTGAGATACAATACTACAGTT
CGTCTACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None