- Probe CUST_22226_PI390587928
- Source Contig U35_32529
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22226_PI390587928 | Hv_44K_v2 | GCGCCTCTTCGCCTCCGACGTCCTCGTCTCCGGGCTCAACGGCCTCGGCGCTGAAACCGC | 156 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.784 | 1.324 | 1.181 | 0.668 | 0.647 | 0.664 |
| Raw | 655.197 | 660.363 | 596.923 | 444.472 | 176.447 | 202.303 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60529.1 | 3467 | 2e-24 | 113 - 172 | 100 | 60 / 60 | plus | ABC08053 |
| JLOC1 | JLOC1_39480.1 | 3614 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32558 | 495 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32529 | 216 | 3e-25 | 157 - 216 | 100 | 60 / 60 | plus |
Contig Sequence (216 bp)
>U35_32529 216 Hv_44K_v2 AAACGCTCTGCCACAACACCAGCGCCGCCTCCCCCTTCCCCCGACGCCGCCCCACGAATC AGTACTCCCCACCGGCCCGAACGGGGCCGCGCCGCAGGAGATCGACGAGGACCTCCACAG CAGGCAGCTCGCCGTGTACGGGAGGGAGACCATGCGGCGCCTCTTCGCCTCCGACGTCCT CGTCTCCGGGCTCAACGGCCTCGGCGCTGAAACCGC
Homology of Contig U35_32529 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |