- Probe CUST_22222_PI390587928
- Source Contig U35_44501
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_22222_PI390587928 | Hv_44K_v2 | GTTAAAGAGCTTCATAAATCATGCATGACCGCTAGAGGATTTTCACTTCAAAATTTTGAC | 58 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.937 | 1.880 | 1.176 | 0.778 | 0.350 | 0.353 |
Raw | 2247.553 | 3499.100 | 1882.173 | 1959.979 | 309.002 | 342.211 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_3981.2 | 1275 | 2e-24 | 1123 - 1182 | 100 | 60 / 60 | plus | ABC42298 |
MLOC | MLOC_3981.1 | 1292 | 2e-24 | 1142 - 1201 | 100 | 60 / 60 | plus | ABC42298 |
JLOC1 | JLOC1_2412.1 | 1286 | 8e-25 | 1135 - 1194 | 100 | 60 / 60 | plus | |
Harvest21 | ABC42298 | 505 | 3e-25 | 59 - 118 | 100 | 60 / 60 | minus | ABC42298 |
Harvest35 | U35_44501 | 505 | 3e-25 | 59 - 118 | 100 | 60 / 60 | minus |
Contig Sequence (505 bp)
>U35_44501 505 Hv_44K_v2 TTTTTTTTTTTTTTTTTACAGGTCCAAACAGGGTCAAACAAACTATTAGTTTTACATTGT CAAAATTTTGAAGTGAAAATCCTCTAGCGGTCATGCATGATTTATGAAGCTCTTTAACGA TTATGCATGACACTTGAACAAACACCATCCAACCGTTGTTTGCAACTTCTTCGTAGGTCC ATCAACTCGCTGTCTCTGCTTGACTACTGCCTTTCGCGCTTCTCTTCCGCTTCCTAACCC TTTTTCGCTTTGCATCGCCATCGGTCTTCGGGCCCTGATTTTGAGGAGCTGATGGCTGGG GCTTTGGTTTCTTTTTCTTGCAGGAAAGTGGGTTTGGGCCCTTTGCTCTGTTTCTTTTAA ACTTGCTTTTCTCTACCACTCCGGGAGTGTTTCCATTGATAGATGTCTTTCCTTCAGATG ACGCCTTTAATAGCTTCTTAAATTCTGATTTTTCCATATGTATACGCTTCTCCTCATCCA ACTGAGCAAACTGACGTTGCTGCAC
Homology of Contig U35_44501 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |