- Probe CUST_22219_PI390587928
- Source Contig U35_44507
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22219_PI390587928 | Hv_44K_v2 | AGGAGCTCCGGTTATTATACATTGAATACCAAAAGAAGCTGGTTGCTGAGGTGGGTGACA | 251 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.856 | 0.966 | 1.479 | 1.836 | 0.946 | 0.666 |
| Raw | 15.374 | 24.818 | 36.256 | 67.238 | 12.649 | 9.919 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365179 | 1665 | 7e-23 | 468 - 527 | 98 | 59 / 60 | plus | ABC10065 |
| MLOC | MLOC_55955.3 | 1392 | 7e-23 | 1069 - 1128 | 98 | 59 / 60 | minus | ABC10065 |
| MLOC | MLOC_55955.1 | 1439 | 7e-23 | 1117 - 1176 | 98 | 59 / 60 | minus | ABC10065 |
| MLOC | MLOC_55955.2 | 1424 | 7e-23 | 1102 - 1161 | 98 | 59 / 60 | minus | ABC10065 |
| JLOC1 | JLOC1_36137.1 | 1712 | 4e-23 | 268 - 327 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC10065 | 1617 | 1e-23 | 450 - 509 | 98 | 59 / 60 | plus | ABC10065 |
| Harvest35 | U35_44507 | 312 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1536 | 1868 | 1e-23 | 450 - 509 | 98 | 59 / 60 | plus |
Contig Sequence (312 bp)
>U35_44507 312 Hv_44K_v2 CTCCGCCGCCGCCGCCGCCGCCGCCTCCGCCGCGCCCGCCCTGGCCCCTCCGCTGGCGCC CCTCATCGCCGCGCAGCTCAAGTTCCTCCTCACCAACTCCAGTCTCCCCAAGGTGGCGCC GGACGTCATATTCGGGCAGGGCGACGAGGGATTCCATCCGCTGGTCGATTATGATGAGTC CGGGAATGGGGGCAAGAGCTGCTTGGCACACTGGGATTACCGCGACCCCCGTGGCCTCCT CTGCCTCGTGGAGGAGCTCCGGTTATTATACATTGAATACCAAAAGAAGCTGGTTGCTGA GGTGGGTGACAC
Homology of Contig U35_44507 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |