barSeed - Barley Seed Development Database

Probe CUST_22206_PI390587928

Source Contig U35_32530

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22206_PI390587928	Hv_44K_v2	GTCACCGTCGCCACGGCCAACGCCCTCGCCGGGTCGCTCGAGCTCGCCGCGGCGCTGCCA	313	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14915.1	3408	2e-24	359 - 418	100	60 / 60	plus	ABC17394
MLOC	MLOC_14915.2	2936	2e-24	332 - 391	100	60 / 60	plus	ABC17394
Harvest35	U35_32530	422	3e-25	314 - 373	100	60 / 60	plus

Contig Sequence (422 bp)

>U35_32530 422 Hv_44K_v2
TTTTTTCCCTCTTTTTCTCTAGGGTTTTCCATCTGCCATGGCCACTCCCGCCGCCGCCGC
CGCCGCCGCCGTGACGCTCGCTGGCAAGGGCGCCGTGCTCACCCCCGCCGCCGTCTACGC
GCTCTCCGTCGGCCTCGCCGGCCCCGTCATCGACGCCTCCGCGCTCCAGCGGCTCTCCAA
CCGCGCCCCCTCCCCGCAGGAGACCCCTGGGTCGCTCCGGGACCTGGATTTGGCGACGCA
CGAGTCCCGCGCGGCCGCGGCGGTGCTTCTCAACAAGCTCCTCCTCACAGCGAACGATTC
CTCCTCCGCCCTCGTCACCGTCGCCACGGCCAACGCCCTCGCCGGGTCGCTCGAGCTCGC
CGCGGCGCTGCCACTCGCCACCCGCGACGAGGCCGCCGTCGCCGCGGCGTCCGCCCCCGT
GG

Homology of Contig U35_32530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None