- Probe CUST_22204_PI390587928
- Source Contig U35_32532
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22204_PI390587928 | Hv_44K_v2 | TAATAACACACAGTATAATGACACATCTGTTGAGCGACTTATACGGGAAGTGACAAATGG | 248 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.716 | 0.950 | 1.570 | 1.102 | 1.082 | 1.081 |
| Raw | 37.373 | 70.294 | 110.761 | 110.737 | 42.018 | 46.803 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14312.10 | 5812 | 2e-24 | 2227 - 2286 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.4 | 5709 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | plus | ABC09063 ABC37110 |
| MLOC | MLOC_14312.13 | 4646 | 2e-24 | 1386 - 1445 | 100 | 60 / 60 | plus | ABC09063 ABC37110 |
| MLOC | MLOC_14312.8 | 5823 | 2e-24 | 2256 - 2315 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.3 | 5668 | 2e-24 | 2275 - 2334 | 100 | 60 / 60 | plus | ABC09063 ABC37110 |
| MLOC | MLOC_14312.5 | 6469 | 2e-24 | 3185 - 3244 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.12 | 5721 | 2e-24 | 1580 - 1639 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.9 | 6172 | 2e-24 | 2249 - 2308 | 100 | 60 / 60 | plus | ABC09063 ABC37110 |
| MLOC | MLOC_14312.6 | 5929 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.11 | 6597 | 2e-24 | 3130 - 3189 | 100 | 60 / 60 | plus | ABC09063 ABC37110 |
| MLOC | MLOC_14312.14 | 5100 | 2e-24 | 1386 - 1445 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.7 | 6375 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.2 | 6003 | 2e-24 | 2278 - 2337 | 100 | 60 / 60 | plus | ABC09063 |
| MLOC | MLOC_14312.1 | 6150 | 2e-24 | 3189 - 3248 | 100 | 60 / 60 | plus | ABC09063 |
| JLOC1 | JLOC1_9770.11 | 5526 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.10 | 5663 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.9 | 5741 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.8 | 5435 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.7 | 5650 | 8e-25 | 1663 - 1722 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.6 | 6013 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.5 | 6026 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.4 | 6241 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.3 | 6319 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.2 | 6228 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9770.1 | 6104 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32532 | 377 | 3e-25 | 249 - 308 | 100 | 60 / 60 | plus |
Contig Sequence (377 bp)
>U35_32532 377 Hv_44K_v2 GGCGAATCTAATGGTGATATTGAGTTGGGATCTCATGGCAGGTCAAAGAAAATGAATGCT GAAGACCCGCCCTCAGATTGTAATCAACAATCTGTCCCAAGGCAGCCTTTTCCAAAGCAG CCCACAGATTCCAAGCAGTTCAAGGGCAGACCAGTCTCTTCTCAGAGAGCAGTTCTAACA GGACAAAATACTGCAGATCAGAAGCCAATCAACAAAAGGTCTCTTGTTCCAAAAAAGCAA GCTTCAGTTAATAACACACAGTATAATGACACATCTGTTGAGCGACTTATACGGGAAGTG ACAAATGGNCAGTTCTGGCACAATCCGGAGGAGGAAGAACTTCAGTGTGTTCCTGGAAGC TTTGATTCTGCTGAGGA
Homology of Contig U35_32532 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g21287.1 | 1379 | 4e-61 | |
| Arabidopsis v10 | None |