- Probe CUST_22203_PI390587928
- Source Contig U35_32533
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22203_PI390587928 | Hv_44K_v2 | TGTCAACGGAACACATTTCACTTTGAATCTATCTGCTCTTCGTTCCAAAATTGCAAGTGC | 234 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.333 | 0.990 | 1.287 | 0.884 | 0.822 | 0.700 |
| Raw | 347.709 | 305.608 | 467.512 | 422.541 | 156.253 | 153.513 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74717.1 | 3150 | 7e-23 | 351 - 410 | 98 | 59 / 60 | plus | ABC02656 ABC34888 |
| JLOC1 | JLOC1_49820.2 | 2850 | 4e-23 | 346 - 405 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_49820.1 | 3102 | 4e-23 | 347 - 406 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02656 | 3063 | 1e-23 | 295 - 354 | 98 | 59 / 60 | plus | ABC02656 |
| Harvest35 | U35_32533 | 492 | 3e-25 | 235 - 294 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_820 | 3125 | 1e-23 | 359 - 418 | 98 | 59 / 60 | plus |
Contig Sequence (492 bp)
>U35_32533 492 Hv_44K_v2 GCACCCGCACATCGCCACTCTCCCCCACGCCACCACCACCGCCGCTGCGGCTTACGGCTA CGCAGCTCTCGCGTCCCTCGACGCCGCCGCCGCTGTCCGAGGTTTCCGGCCGCTAACTTC GTCTCCTCTAGGATTGACCCGCCCCTCCACACGATCGCTGCGTCCTCCGCCTCTCCCCTG GGACGTCGTCGTCAAGGTCAAATATGGTGACACACTTAAGAGGTTCAATGGCTATGTCAA CGGAACACATTTCACTTTGAATCTATCTGCTCTTCGTTCCAAAATTGCAAGTGCTTTTAA GTTTGGCCCTGATGCTGACTTCATTCTCACTTACACTGATGAGGATGGGGATGTTGTCAT GCTGGACGATGACGAGGACTTGCATGATGCAGCTATCCATCAGAAACTGAACCCTCTCAG GATTAATGTTCAGGTAAAGAATAGCCATGCTGATGCATCTCACATTAACCGGCAGGATTC AAGACCTAACTG
Homology of Contig U35_32533 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |