barSeed - Barley Seed Development Database

Probe CUST_22194_PI390587928

Source Contig U35_18245

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22194_PI390587928	Hv_44K_v2	AATCCCATCACACATACATGAGGTGAGTACATGATCACTCTACTTCGCTAGTGCTACTCG	74	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55556.2	2206	7e-23	1852 - 1908	100	57 / 57	minus	ABC09057 ABC09058 ABC44905
MLOC	MLOC_55556.1	1712	7e-23	1440 - 1496	100	57 / 57	minus	ABC09057 ABC09058 ABC44905
JLOC1	JLOC1_35851.1	1733	4e-23	214 - 270	100	57 / 57	plus
Harvest21	ABC09056	680	3e-25	75 - 134	100	60 / 60	plus
Harvest35	U35_18245	680	3e-25	75 - 134	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_18245 680 Hv_44K_v2
CCGGGATGACCGGAGCAACCTGTTGAAACGCTTCTTATACGCTCCGTTTAGCCCCCATGC
CTATCTAGCCTGCTAATCCCATCACACATACATGAGGTGAGTACATGATCACTCTACTTC
GCTAGTGCTACTCGCTCGCTTAGCTAGCTGGTGATCGATATGGGGAAGGTGGTCGTGGCG
GAGGCCACGGCGCGTCAGGTGGTGGCCTTCGTCCTCGGCGCCGCCGCGGCGCTCACCATC
GTCGTGCTCGTCCAGTACCGGGCGCCGGCCGCCGGGCTCAGCCGCGCCAGGACGCCGGGG
CACTTCTCCGGCCTGAGATCATCATCCGGCGACCAGCACCACCGCCGCAACGGGACCACA
GCACGTGCCGTTGTTGTTCATCATGCGCCACCGGACAATCGTCGCCGTCCGGCGAACACA
ACAACAATCACAAAGCGCAACCCTTCCTCTACTGCCGCTGCTCTAAGTCATCTTCCCAGC
ACACGTCACCATGGAGAAAAGGGAGCGAAGGAGGAGGCGGCGGAGTTCCGGGGGCTGGCG
GCGGCGGTGGCGCGAGCAGCGACGGACGATCGGACGGTGATCATCACGTGCGTGAACCAG
GCCTGGGCGGCGCCGGGCTCCCTGCTGGACCTGTTCCTGGAGAGCTTCCGCATCGGCGAC
GGCACGGNGCGCCTCCTCCC

Homology of Contig U35_18245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None