barSeed - Barley Seed Development Database

Probe CUST_22192_PI390587928

Source Contig U35_18246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22192_PI390587928	Hv_44K_v2	GGAGAGAGAGACGATAAGTATTTGTTGCTATACCTGTAAAATGCTCTATTATGAAAGCAT	1472	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359064	1656	2e-24	1501 - 1560	100	60 / 60	plus	ABC09057 ABC09058 ABC44905
MLOC	MLOC_55555.4	1507	2e-24	1429 - 1488	100	60 / 60	plus	ABC09057 ABC09058 ABC44905
MLOC	MLOC_55555.3	1892	2e-24	1823 - 1882	100	60 / 60	plus	ABC09057 ABC09058 ABC44905
JLOC1	JLOC1_35850.1	1860	8e-25	1741 - 1800	100	60 / 60	plus
Harvest21	ABC09057	1570	3e-25	1473 - 1532	100	60 / 60	plus	ABC09057
Harvest35	U35_18246	1570	3e-25	1473 - 1532	100	60 / 60	plus

Contig Sequence (1570 bp)

>U35_18246 1570 Hv_44K_v2
GGGACTAGTCCTCATTCATCAGTCATCAGTTCATCACTCATACACATACATACATATGTA
CATGATCAGTGCACACAGCACACCAGTAGTACTACTCGATCAGTTAGCTAGCTGGTGATC
CATATGGGGAAGGTGGTCGTCACGGAGGCCACGGCGCGCCAGGTGGTGTCCTTCGTCCTC
GGCGCCGCCGCTGCGCTCACCGTCGTCATGCTCGTCCAGTACCGGGCGCCGGCCGCCGGG
CTCAGCCGTGCGAGGACACCGGGGCACTTTTCCGGCTTGAGATCATCATCATCAGATGAC
CACCACCACCACCACCGCAACGGGACGACTGCACGTGCCGTAGTTCGTCAGGCGCCACCG
GTCGCCACTAATGCAGAGGACGATCATCGTCGTCCGGCGAACGCCACAACAATCACAAAG
CCCAATTCTACCTCTACTGCTGCTGCTCTACCTCTACGTCATCTTCCCAGCACAAATCAC
CATGGACAAAAGGGAGCCAATGAGGAGTCGCCGGAGTTCCGGGGCCTGGCGGCAGCGGTG
GCGCGAGCGGCGACGGACGACCGGACGGTGATCATCACGTGCGTGAACCAGGCCTGGGCG
GCGCCAGGCTCCCTGCTGGACCTGTTCCTGGAGAGCTTCCGCATCGGCGACGGCACGGCG
CGGCTCCTCCCACACGTGCTCGTCGTGGCCATGGACCCCGGCGCCCACGCACGGTGCCTC
GCCGTCCACCGGCACTGCTACCACTACACCATCCCGGGCCTCAACATCGACTTCGCCGCC
CACAAGTACTTCCTCTCCAAGGACTACCTGGAGCTGGTGTGGAGCAAGCTGAAGCTGCAG
CGCCGGATCCTGGAGCTCGGCTACGGCTTCCTCTTCACCGACGTCGACATCGTCTGGCTA
CGCGACCCGTTCAAGCACGTGACGGCGTACGCCGACATGACGGTGTCCAGCGACGTGTAC
TTCGGCGACCCCGACAACCTTGGCAACTTCCCCAACACGGGGTTCTTCCACGTGAAGCCC
AACGCGCGGACCATCGCCATGACGAAGCTGTGGCATGGGGCTAAGGGCAAGTACCCGGGA
GCCAACGAGCAGCCGGTGTTTAACATGATGAAGAAGCGGATGGTGGCGGAGCTGGGGCTC
CGGGTGCAGTACATGAACCCGGCCTACGTCGGCGGGTTCTGCAGCTACGGGAAAGATTTG
AGGAAGATCGTCACCATGCACGCGAATTGCTGCGTGGGGATTGAGAACAAAATTAAGGAC
TTGAAGAACGTGCTGGGTGATTGGAGGAACTATACGAGGATGCCGCCATGGGAGAGGCAC
CGGGCCAAATGGACCGTGCCCGGCGCCTGCATTCGAGCCGAAAAACAAGTTTGATTCATC
AATTGGTTGATGGATTTTCCAATCGCCTGTTATAGAGTAGCTTATTTAATTCTACATATA
TATATATATATATATACTCCCTGTGTGAGGGTGGAGAGAGAGACGATAAGTATTTGTTGC
TATACCTGTAAAATGCTCTATTATGAAAGCATATACTAGTACACTTCTGCTTCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_18246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63280.1	409	8e-166	protein\|regulatory protein, putative, expressed
Brachypodium v1_2	Bradi1g01760.1	394	2e-170
Arabidopsis v10	AT1G14590.1	386	7e-77	Nucleotide-diphospho-sugar transferase family protein \| chr1:4998957-5000617 REVERSE LENGTH=386