barSeed - Barley Seed Development Database

Probe CUST_22191_PI390587928

Source Contig U35_18247

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22191_PI390587928	Hv_44K_v2	TGAGGAGAATGAGATAGACGATCGAGTATACCTGTAAAATGATGTATAATCGGGAAATAC	705	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55556.2	2206	2e-24	50 - 109	100	60 / 60	minus	ABC09057 ABC09058 ABC44905
MLOC	MLOC_55556.1	1712	2e-24	52 - 111	100	60 / 60	minus	ABC09057 ABC09058 ABC44905
JLOC1	JLOC1_35851.1	1733	8e-25	1599 - 1658	100	60 / 60	plus
Harvest21	ABC09058	846	3e-25	755 - 814	100	60 / 60	plus	ABC09058
Harvest35	U35_18247	817	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_18247 817 Hv_44K_v2
ACACCATCCCGGGGCTCAACATCGACTTCGCCGCCCACAAGTACTTCCTCTCCAAGGACT
ACCTGGAGCTGGTGTGGAGCAAGCTGAAGCTGCAGCGCCGGATCCTGGAGCTCGGCTACG
GCTTCCTCTTCACCGACGTCGACATCGTGTGGCTGCGCGACCCGTTCAAGCACGTGACGG
CGTACGCCGACATGACGGTGTCCAGCGACGTGTACTTCGGCGACCCCGACAACCTGGGCA
ACTTCCCCAACACGGGGTTCTTCCACGTGAAGCCCAACGCGCGCACCATCGCCATGACGA
AGCTGTGGCACGGGGGTAGGGGTAAGTACCCGGGCGCCAACGAGCAGCCGGTGTTTAACA
TGATGAAGAAGCAGATGGTGGCGGAGCTCGGGCTCCGGGTGCAGTACCTGGACCCGGCCT
ACGTCGGCGGGTTCTGCAGCTATGGTAAGGATTTGGGGAAGATCGTCACCATGCACGCGA
ACTGCTGCGTGGGGATTGGGAATAAGATTAAGGATCTGAAGGGCGTGTTGGGTGATTGGA
GGAACTATACCAGGATGCCGCCGTGGGAGAGGCACCGGGCCAAATGGACCGTGCCCGGCG
CCTGCATCAAAGCCGAAAAACAAGTTTGATCCATCCATTCATTGATTGATGGATTTCTCA
GTCGTTTGTTACTTATAGAGTAGTTTAATTTACTTCAAATTGTCGTGAGGAGAATGAGAT
AGACGATCGAGTATACCTGTAAAATGATGTATAATCGGGAAATACAATATATTTATTTTA
TATATGCTAGCGAAAAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63280.1	409	1e-113	protein\|regulatory protein, putative, expressed
Brachypodium v1_2	Bradi1g01760.1	394	1e-120
Arabidopsis v10	AT4G19970.1	715	4e-54	CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). \| chr4:10818242-10825343 FORWARD LENGTH=715