barSeed - Barley Seed Development Database

Probe CUST_22187_PI390587928

Source Contig U35_4662

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22187_PI390587928	Hv_44K_v2	AGAAAGGAACAGAGCTCTTGTAAGGTTTTATAGTCTACTAGATGACCCGTTGCGCCGATG	1654	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.298	1.528	1.085	0.811	0.221	0.492
Raw	58.872	107.903	68.268	82.072	7.482	18.772

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57069.15	919	2e-24	752 - 811	100	60 / 60	plus	ABC10183
MLOC	MLOC_57069.1	2396	2e-24	2303 - 2362	100	60 / 60	plus	ABC10183
MLOC	MLOC_57069.2	2315	2e-24	2222 - 2281	100	60 / 60	plus	ABC10183
MLOC	MLOC_57069.8	1477	2e-24	1392 - 1451	100	60 / 60	plus	ABC10183
MLOC	MLOC_57069.14	1277	2e-24	1152 - 1211	100	60 / 60	plus	ABC10183
MLOC	MLOC_57069.4	1829	2e-24	1662 - 1721	100	60 / 60	plus	ABC10183
JLOC1	JLOC1_36937.8	763	8e-25	618 - 677	100	60 / 60	plus
JLOC1	JLOC1_36937.7	1742	8e-25	1597 - 1656	100	60 / 60	plus
JLOC1	JLOC1_36937.6	1418	8e-25	1273 - 1332	100	60 / 60	plus
JLOC1	JLOC1_36937.5	1416	8e-25	1271 - 1330	100	60 / 60	plus
JLOC1	JLOC1_36937.4	1435	8e-25	1290 - 1349	100	60 / 60	plus
JLOC1	JLOC1_36937.3	1527	8e-25	1382 - 1441	100	60 / 60	plus
JLOC1	JLOC1_36937.2	1522	8e-25	1377 - 1436	100	60 / 60	plus
JLOC1	JLOC1_36937.1	1534	8e-25	1389 - 1448	100	60 / 60	plus
Harvest21	ABC10183	1511	3e-25	48 - 107	100	60 / 60	minus	ABC10183
Harvest35	U35_4662	1761	3e-25	1655 - 1714	100	60 / 60	plus

Contig Sequence (1761 bp)

>U35_4662 1761 Hv_44K_v2
GAACGCGCGAGAAGCGGCGCCGCCTCGTGCGGGAGCGGGGACTCAGATAGCCATCGCGAT
GAGGTCCGCCGCGTGGCACGCCCTGCTCCCGTCACTAGTGCCTGCCAACCCCGGCATCTT
CTTCCTCCGCAGCCAGCCCGGGCGGTTCTTGTCACACGCTCACGGCTTGCGGCCGTGTCG
CGCTGCGAGCTCTCTGCCCCCCGGGGAGTATCTTCCTCCCTTGTTTAGCGTGGCGCCGAT
GATGGACTGGACAGACAATCACTACAGGACGCTCGCGCGGCTGATATCGAGGCACGCCTG
GTTATATACAGAGATGGTGGTCGCCGAGACTATTGTGCATCAGAAAGATAAGTTGGATAG
ATTTTTAGCATTTCCTGCTGAACAGCACCCTATTGTGTTACAACTTGGTGGAAGTAATCT
TGACAATTTGGCAAAGGCAACTGAATTAGCAAGTGGTTATTCATATGATGAGATCAACCT
GAATTGTGGTTGCCCCAGCGGCAAAGTTGCTGGCCATGGTTGCTTCGGTGCTCGCTTAAT
GTATGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTGATGTCCC
TGTCAGTGTTAAATGCAGAATTGGAGTTGACGATCGTGACTCCTACGAAGAACTTTGTAC
ATTTGTAGATAAGGTTGTTTCTAAGTCACCAACTAGGCATTTTATCATTCATGCTCGGAA
AGCGTTGCTCAGTGGCCTCAGTCCTGCGGAGAATCGGACGGTTCCTCCTTTAAAATATGA
GTACTATTATGCTTTGTTGCGGGACTTCCCAGAGGTACACTNTACACTAAATGGAGGCTT
AACGACTATTGAGCAAGTTAGTGCATCCATAAGACAAGGCGCCCATCGAGTTATGGTTGG
TCGTGCTGCTTACAATAATCCATGGAATATGCTAGGGCACGTGGATAGTGAAATTTATGG
CATGGCAACATCTTGCTCTTCGCGTCGCCAGATCCTTGAGAGCTACCAAGTTTATGGTGA
TTCTATAATTGGACAGTATGGCATCAGCAGGCCAAACGTGAGGCAACTTGTTAAGCCATT
GTTACATTTGTTCCACTCAGAGCCTGGTAATAGTTTGTGGAAACGTAGGGCTGATTCTAC
GTTGCGCCATTGCAAGACACTTGCACAGTTCTTGGAGGAAACTCTTGACGCCATTCCTGA
CTCTGTCCTTGACGCACCTGTATTGAGGGAGCCATCCAGGGAACAAGACTACTTCGCCCA
TGTGGATTCCTTATTGCCGCCAAGATACGCAACACTGGCCAATGGCAGCTATGAAAGCCC
AGCACTTGTAACTGCATCCAGTTGAGCTTCCAGAGAAAAAGCTACTCCCTCTCATCCATA
TTAATTGGCGCCGCGCTCTAGTATAACTTTGTAGTTTTTCCCAACTGCAATTATTTAGGT
ATAGAGGGAGTAATATGGATTGGAGCGGGTAAAAGATAGGGAAAGCTGCATGCTGCCTTC
AGTCATGTCGTCGATACTTTCTTCTTCTGGGATAACAAGCTACACATTACATTACTTAGG
AAGAGGATTACAATAGTCTCGGCAAATACATTACGGAACTTATAAATCCCGAACTTGCCA
CGTTTTTGTCTAAGGGTTGCAGCCGTATTTTATTAGAAAGGAACAGAGCTCTTGTAAGGT
TTTATAGTCTACTAGATGACCCGTTGCGCCGATGGCGCAAAGGGCTAGGGCAAACCAAGC
ATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g20990.1	438	protein\|tRNA-dihydrouridine synthase, putative, expressed
Brachypodium v1_2	Bradi5g03740.1	437
Arabidopsis v10	AT3G63510.1	419	FMN-linked oxidoreductases superfamily protein \| chr3:23450542-23452682 FORWARD LENGTH=419