barSeed - Barley Seed Development Database

Probe CUST_22181_PI390587928

Source Contig U35_4669

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22181_PI390587928	Hv_44K_v2	GCACTTCTATTGAGAACTGACATTTTGTTATGTGGATCTATTGTGAGTAGTTGCTGTAAA	1581	GeneList: blue MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.984	1.787	1.194	0.819	0.415	0.440
Raw	1273.130	1701.044	1038.370	1081.009	198.561	230.966

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_544.5	1215	2e-23	1146 - 1203	100	58 / 58	plus	ABC14019
MLOC	MLOC_544.3	1806	2e-23	1737 - 1794	100	58 / 58	plus	ABC14019
JLOC1	JLOC1_335.1	1883	1e-23	1750 - 1807	100	58 / 58	plus
Harvest21	ABC14019	1398	3e-25	15 - 74	100	60 / 60	minus	ABC14019
Harvest35	U35_4669	1655	3e-25	1582 - 1641	100	60 / 60	plus

Contig Sequence (1655 bp)

>U35_4669 1655 Hv_44K_v2
GTCAAACCCCACGCTCCAAACGCTCCTCGCCCCCTCCGACTCCCCTCGCCTCAAATCTCA
CCAGTCACCGTTCCGCCAGTCTCAGCCCCGGCGCCGAGGCGCCGCGCGCAGCCATGGCCG
GCTCCGAGCAGCGCGTCGTCGCCGTCATCATGGTCGGCGGCCCCACCAAAGGGACGAGGT
TCCGGCCGCTGTCGCTCAACGTGCCCAAGCCGCTCTTCCCGCTCGCCGGCCAGCCCATGG
TGCACCACCACATCTCCGCGTGCCGCCGCATCCCCAACCTGGCACAGATATACCTCATCG
GCTTCTACGAGGAGCGGGAGTTCGCCCTCTACGTATCCTCCATCTCCAACGAGCTCAGGA
TCCCCGTCAGGTACCTGAGAGAGGATAAGCCGCGCGGGTCAGCCGGAGGGCTCTACAGCT
TCAGGGATTACATCATGGAGGATAGTCCGGCGCACATTGTTTTGCTGAACTGTGACGTCT
GTTCTAGCTTCCCCTTGCCAGACATGCTCGAGGCCCATAAAAAGTATGGAGGAATGGGCA
CTTTGCTAGTCAATAAGGTATCTGCGGAATCAGCTAACCAGTTTGGCGAGTTAGTGGCTG
ATCCTGAAACAAATGAACTGTTACACTATACAGAAAAACCAGAGACTTTTGTGAGTGATC
TCATAAATTGCGGAGTCTATATATTTACTCCCAATATACTTAATGCAATCGAGGATGTCT
TGAAACAGAAGAAAGATAGAGCTAATTTGCGCCGTGTATCCAGCTTTGAAGCTCTTCAGT
CCGCAATGAAGGCAATTCCAGCAGATTATGTTAGGTTAGATCAAGATATCTTATCTCCTC
TAGCAGGAAAGAAGGAACTTTACACATACGAGACACTTGATTTTTGGGAACAGATCAAGA
CTCCAGGGATGTCTTTGAGATGCTCTGGTCTATATCTCTCCCAGTTTCGCCATACCTCTC
CTCATCTCTTGGCCTCTGGAGATGGCAAAAAGGGTGCCACTATTATAGGTGACGTGTACA
TCCATCCATCTGCAAAGGTTCACCTAACTGCAAAGATTGGCCCCAATGTCTCAATATCAG
CAAATGCACGCATTGGAGCAGGAGCCAGGCTTATCAATTGCATCATTCTGGATGATGTTG
AAATTATGGAGAATGCAGTTGTTATACATTCAATAGTAGGGTGGAAGTCAACAGTAGGGA
AATGGTCACGTGTACAGGGTGAAGGTGACCACAATGCCAAACTTGGTATCACCATTCTTG
GTGAAGCCGTTGATGTTGAAGATGAGGTAGTTGTAACTAACAGCATCGTGCTCCCAAATA
AAACTCTCAATGCCAGCGTGCAAGATGAGATCATCCTATAATATCCATTGCACAACACAT
ATCTTTATTAAATCCTGAATAAGGTCTTCATACCAAATATGTAATTTTCCTTCTTTTTCT
TCTTCTTTACCCCCCTCATGTATGCTTCCATTAGATTGGGGTCATTAGTCTGTACAAGGC
ATGTGATGTGATATTGGTGTAATTTTGTTTAGCATTCTGGCATCAAGTTCACTGGTGTAG
AAATTGTACAAACAGATCACAGCACTTCTATTGAGAACTGACATTTTGTTATGTGGATCT
ATTGTGAGTAGTTGCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11050.1	416	protein\|mannose-1-phosphate guanyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g70620.1	416
Arabidopsis v10	AT1G74910.1	415	ADP-glucose pyrophosphorylase family protein \| chr1:28135770-28138456 REVERSE LENGTH=415