barSeed - Barley Seed Development Database

Probe CUST_22180_PI390587928

Source Contig U35_4670

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22180_PI390587928	Hv_44K_v2	TAGTCTACTACTCTGCCATCGCGGTACATGATACGCAAGCTTTTGCAATTCTAGAAAAAA	1014	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.365	1.274	1.134	0.897	0.446	0.486
Raw	120.472	174.781	137.329	171.575	30.186	35.482

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6812.1	1647	5e-22	1568 - 1629	97	60 / 62	plus
Harvest21	ABC10066	1083	3e-25	1015 - 1074	100	60 / 60	plus	ABC10066
Harvest35	U35_4670	1083	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1083 bp)

>U35_4670 1083 Hv_44K_v2
GGCAGCTTATGGCTGAGGAGATATGCCGTGATATATACCGGTCAGATTCTGAGTGGAGGA
TCATTTTACTTAGGTATTTCAACCCGGTTGGGGCTCACCCCAGTGGATACCTTGGTGAAG
ACCCACGTGGAGTTCCAAACAACCTTATGCCCTTCGTTCAGCAAGTTGCTGTTGGGAGGA
GGCCGTCAGTGACAATCTTTGGAAATAACTATGCAACTAAAGATGGGACTGGGGTACGAG
ATTATATTCATGTGCTTGATCTTGCTGAGGGGCATATTGCTGCACTACGGAAGCTTTTTG
ATAGTTCGTCTAACATAGGATGTGAACCATACAACCTTGGAACTGGAAAAGGGACGTCAG
TGTTGGAGATAGTAAATGCATTCGAGAAGGCTTCTGGAAAGAAAATCCCGCTGGTCGTCG
GTCAGCGCCGCCCTGGTGACGCGGAGATTCTCTTTGCAGGAACTGGTAAAGCAGAGAGAG
AACTCAACTGGAAAGCAAAGTATGGCATCACGGAGATGTGCAGGGACCAGTGGAACTGGG
CTAGCAAGAACCCTTACGGGTACGGGTCACCCGACTCGACCAAGCAGAACGGCAATTCAC
ACTGAACTGAACAACGCGGATCGGTCCGTGTGGACTCACCTGTACATGCAACTTAGTGCC
TACGAGCTGGGATCGGTGTAGATCTAGTCGGCCAGTCATCATACAGAGAAAGTTACGAGA
TTAGAGAAAGGTTGCTCTGTTGCTCTTCCGGTATTGGTACAAAATCTATCTTCCTCCTGC
ATATATTTTTTTCGTCGAGATTGTTCTAGGAAGATTTGCTAGCTTGCTATAGTCAACCAG
CTAATTCAATTCTTTTACTGCTAATTGAGTTGCATTGCCTAGCAGCTGTATACGAATCCT
TTTTTGTGCCTGTGCTGTAATAGTAATTAGACGAGCCACAGTAATACACTCAGCTTGGTT
GTATCTTTCTTTCATGCAGCGTGTTGCCCCTCCTGTGTATATATATCAGAAATTTAGTCT
ACTACTCTGCCATCGCGGTACATGATACGCAAGCTTTTGCAATTCTAGAAAAAAAAAAAA
AAA

Homology of Contig U35_4670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g15420.1	370	2e-123	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi4g28040.1	380	4e-131
Arabidopsis v10	AT4G10960.1	351	8e-106	\| Symbols: UGE5 \| UDP-D-glucose/UDP-D-galactose 4-epimerase 5 \| chr4:6716083-6718472 REVERSE LENGTH=351