barSeed - Barley Seed Development Database

Probe CUST_22168_PI390587928

Source Contig U35_4684

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22168_PI390587928	Hv_44K_v2	TCCACTGTTGGTGTCGCCAACCTCTGAGATTTGAAGCTAAAACTCTGAAGGCTTAAAAAA	2502	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.155	1.316	1.395	1.122	0.424	0.377
Raw	738.343	1324.074	1217.982	1536.582	204.863	196.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10915.4	3450	9e-22	3271 - 3325	100	55 / 55	plus	None
MLOC	MLOC_10915.2	3665	9e-22	3486 - 3540	100	55 / 55	plus	None
MLOC	MLOC_10915.1	3748	9e-22	3612 - 3666	100	55 / 55	plus	None
JLOC1	JLOC1_7182.2	3599	5e-22	3361 - 3415	100	55 / 55	plus
JLOC1	JLOC1_7182.1	3740	5e-22	3502 - 3556	100	55 / 55	plus
Harvest35	U35_4684	2573	3e-25	2503 - 2562	100	60 / 60	plus

Contig Sequence (2573 bp)

>U35_4684 2573 Hv_44K_v2
CAGTTTGGACAAAGATGATGAAAGCAGCTGCAATGGTGAAACAGACCAGCCGCCAAGGAG
ATCCGACAATAATGTAAGAAGAATGAGCGTGCAAGACGCGATTAGCCTTTTTGAGAACAA
GCAGAAGGGTGAGAATCAGGATTCTGAAAGTAAGAAAGCTGGCTTGGTCGCTACCAAATC
AGTACTGCGTCGATGGAGTTCAGGAATGGGTGACTCTCTGAACAGCAATACATCGGAAGA
AAAAACTTCAGATTCTACATCTCAAAGCAAATCTAACAATATGGCTTCTGATGCAGAGAA
GAATGAAGCTGAATTGCAGGCTGAGGCAGATGCAGCGCCAAACAGTGTAGTTGCACCTGA
GGCAGGAAGTTACGATGCTGATGGCCATGGCATCACGGTGTCGGAAATGGAAAATCTGGT
CTCATCCCACACTGAAAATCTGATCTCATCCCACACTAACATTTCTGCTGAACAAACACA
TTCTGGGCAGGAGTCAAACAGTGACAGGGCAATGGCCTCTGCTGAGTGGAACCGCCAGAA
GGAAGCCGAACTTAATCAGATGTTAATGAAAATGATGGAGGTCATGCCTGGGAAGTTTGC
AGGCGCCAATGTAACTGCTACCGGGCTCATTTCTGCAAGTGAGAAGAAAGGCGGACTTCA
AAGAGAGAAGCGAGACACCAAGGTTCGAACAGAGAAAGGTGTAAAGCGACCAGCAAAGGA
GACGAGCACCAAACTGTTGAAGGAATCCGTTGGGCAGAACAGAGCAGCAGTTACCCCAAA
GACTAGCATCATAACAGAGAAGCGTAATTCACCTATTCCACAAAGGACAAGGAGAAATTC
ATCACCTCCAGTCCTGCCAAAGGAAGTGATCTCAAAGACACCAGCCAAAAAAAGTTCCCC
CAAACCATCACCTGCACCAGCTACCCGTAGTTCATGGTCAGGATCTTTGACTAAAGCAAC
TAGTAGTACTGCACAGAAAACTAAAAACTCTCCTGGAGCAGTTTCAACATCGACACCAAC
TAGCCGGAGAAGGACCATGGCAGCATCCTCTGCACCTCAGCCGATTTCAAAGGTGGAAAA
ACCCCTTCAAGCAGTGAAGAGCAAGAAAGAACCTGTGACTGCGACAAAGCCAGCCATTAA
GGCGCAGGAAGATAAGAAGACAAGGACAGCAACAAAGCCAAGCAGAGTGGCTAAAAGTTC
ACCTGCATCAGAAGAAAAATCAAGTGCAATGACAAAGTCAGGCATGTATAACAAGGTCCC
CAAAAAAAGCAGTGTTGTACCAGTAGAATCCAAACCCGTGAAGAAAGCCAGTGGGTTTAG
TCAAGGCGTTGGTTCTGGTGCTGTTAAGAGTAAAGTGCCGCAGCTTAGTGATTCTTCAAA
GGGCAGTGGAATTGTTACCCGTGCGGAAGATAAGGAGCAATCTCCTGTGACAACCGAGCC
AACTACCAAGGTACCAGAGGCTGATCTTGCTCAACCAGCACATGATGTTGATGAAAATTT
AGAAATTTCGATCGATAATGACTTGCATGTTGAAAAAACAGAAAACCCGGGCTCGAGTTT
AAGCGCACCCGAAATCGGCTCCAGTGACCAGGTTGAGCCCTCTGTCGTTGAGGTCAAACC
TCTTGACGAGGACATGGACATCTCATCAGCTGCCTGGGTAGAAGTGGATCATCAAGAAGT
TACTGATGTGGGTGAAAGCGTTACAGGCGAGGAAGTCACCTCGCCAGCAATTGAGCCATT
GCCGTCATCAAGCCCAAGAATCCGTCATTCCTTGTCACAAATGTTGCAAGCAGATAGCAA
CGAACCAGAAATAATAGAGTGGGGAAATGCTGAAAACCCACCCGCAATAGTTTTTCATAA
AGATTCTCCAAAAGGATTCAAGAGACTTCTTAAATTTGCTCGGAAAAACAAAGGAGACAA
CAACACTAATGGTCTGGCAAGCCCATCGGTGGTTTCTGATGGAGAGGATGAACAAGAAGA
ATCCGGTGCTAGTGATGGTGTAAATTCCAGCAGGAGAACTTTTGATGGTTCCAAGACTAA
TAGCATCTTATCAGCTCAATCAACCACCAACAGCTTCAATGCCACGAGCTCGGATAGGCT
ACGGGACAGACCTGGAGCTGCACCGTCAACTAAAGCAGCATCAAGGTCATTCTTCTCCCT
CTCAAACTTCCGGAGCAGCAAAACCGCCGAGTCAAAGCTTCGATAGATAGCATGCATGCC
GTTGTTATACGTGGCCCCGTTAGATGTAAAAATGGTTTGAGGTGATTGATTGTTAAGAAC
GGAGCCAGGTTGTTTGTATCCGGTTCTGCTTTCCCGCTGTCTCCTTCGTCTTGCTGTACA
TCTTTTAAGTATTTTTGGAGTTGTTTGAGAGGACTGGTATGTTACCTTTCTCCTTCTTTC
CTTTTTGCTGGTGATCTTGACTGATAACTGCCGCAGAAGACAGATTTAACTGCATCCAGT
TAGTTGGTTACATCAGGCAGCTTGACTAGAACTGATTGATGATCCACTGTTGGTGTCGCC
AACCTCTGAGATTTGAAGCTAAAACTCTGAAGGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21270.1	1074	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g63500.1	1064	0.0
Arabidopsis v10	None