barSeed - Barley Seed Development Database

Probe CUST_22167_PI390587928

Source Contig U35_4685

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22167_PI390587928	Hv_44K_v2	GATGAAATAGTACACCGTATATCTGTTCAGTTAATTTACAGTCCTGAATTGCCAGTTGAA	1212	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.125	1.577	1.648	0.948	0.267	0.249
Raw	1778.659	3838.888	3490.153	3273.837	302.969	317.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373247	1529	2e-24	1437 - 1496	100	60 / 60	plus	None
MLOC	MLOC_10116.1	2554	7e-23	1366 - 1425	98	59 / 60	plus	None
JLOC1	JLOC1_6597.1	1594	4e-23	1367 - 1426	98	59 / 60	plus
Harvest35	U35_4685	1289	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1289 bp)

>U35_4685 1289 Hv_44K_v2
ACTCCCAATTCCCCATCTCCCCCCAAACCGACGCGCACATCCATCCATCCGCATCGCCCC
CGGCCACGGCCGAAACCCTAGAGATCCACAACCGCCGCGCGAGCAGCAAGAGGAGGAGAT
CGCCGCCATGAACGACCTCATGACCAAGTCCTTCATGAGCTACGTCGACCTGAAGAAGGC
GGCCATGAAGGACCTCGAGGCGGGCGGCGCCAACGACGAGACCGAGCTCAGCCAGGTCGG
CGGCGCCACCGACGAGCGCCTCCAGGGCTTCTTCAAGGAGGCGGAGGCGGTGCGGGAGGA
GATGGCGGCCATCCGCGACGCGCTCGCCCGCCTCCACGCTGCCAACGAGGAGGGCAAGTC
GCTGCACCAGCCCGACGCGCTGCGCGCCATGCGGGTCCGCGTCAACGCCGACATCGTCTC
CGTGCTCGGCCGAGCGCGCGGGATACAGCGCGCCCTCGAGGACATGGACCGCGCCAACGC
CGCGCAGCGCAGGCTCTCCGCGGGCTGCCGCGAGGGCACCACCCTCGACCGCACCCGCAC
CTCCGTCACCGCGGGCCTCCGGAAGAAGCTCAAGGACATCATGCTCGACTTCCAGGCGCT
GCGCCAGCGGATGATGTCCGAGTACAAGGACACAGTCGAGCGCCGCTACTACACGCTCAC
CGGGGAGGTCCCCGAGGACGAGGTCATCGAGCGCATCATCTCCGAGGGCCGCGGCGAGGA
GATCATGAGCGCCGCCGTCGCCGAGCACGGCAAGGGCGCGGTGCTCGCCGCGCTCAACGA
GATCCAGGACCGCCACGACGCCGCCAGGGAGGTGGAGCGCAGCCTCCTCGAGCTCCACCA
GGTCTTCCTCGACATGGCCGTCGTCGTGCAGTCGCAGGGGGAGAAGCTCGACGATATCGA
GAACCAGGTGACCAACGCCAGGGACTACGTCCACTCCGGCAACAAGGAGCTCGGCAAGGC
TCGTCAGCACCAGCGCGGCAGCCGCAAGTGCCTCTGCATCGGCATCATCCTGCTGCTCCT
CCTCATCCTCATCGTCATCGTCCCCATCGCTACCAGCCTCAAGAGGTCCTGAGCAACCAC
ACTACACCGGAGTTTGTGACGATCATCATCTGGACACCTGCATTTGTGTCTAATATGCTG
TTTTGATTTCGTATTCTGCTACTTCATTCGTTGATTTGTGCCCCAATGTCTCTGTATCGT
CAGGATTTAGCTGATGAAATAGTACACCGTATATCTGTTCAGTTAATTTACAGTCCTGAA
TTGCCAGTTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52650.1	312	1e-147	protein\|syntaxin-related protein, putative, expressed
Brachypodium v1_2	Bradi1g09440.1	318	8e-158
Arabidopsis v10	AT1G08560.1	310	8e-94	\| Symbols: SYP111, KN, ATSYP111 \| syntaxin of plants 111 \| chr1:2709778-2710710 REVERSE LENGTH=310