- Probe CUST_22157_PI390587928
- Source Contig U35_4695
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22157_PI390587928 | Hv_44K_v2 | CCTCCACATTGGGATTAATTATTTGGTTGGTTTGGATGTGAAAACTACCTTTCTAATTGT | 440 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.424 | 3.946 | 1.343 | 0.847 | 0.423 | 0.411 |
| Raw | 1116.527 | 2752.165 | 813.848 | 768.780 | 143.981 | 150.143 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73622.2 | 357 | 3e-21 | 291 - 350 | 97 | 58 / 60 | plus | ABC12794 |
| MLOC | MLOC_73622.3 | 1457 | 3e-21 | 905 - 964 | 97 | 58 / 60 | plus | ABC12794 |
| JLOC1 | JLOC1_49019.2 | 1766 | 2e-21 | 1454 - 1513 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_49019.1 | 768 | 2e-21 | 353 - 412 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_4695 | 570 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus |
Contig Sequence (570 bp)
>U35_4695 570 Hv_44K_v2 GCGCGAGAGACCAACCAGAACCAACCCCCCCCCCCCCCCCCCCGCCGGAAGGAGATGAGC TACTATGGCCAGCAGCAGGCGCCCGTCGGTGCCCCGCCGCAGCAAGGTTACCCGCCGCAA GGGTACCCTCCGGCCGGCTACCCGCCGCCGCAGCAGGGCTACCCGCCGGCCGGATACGGC CAGCAGGGCTACCCACCTCAACAGGGCTACCCGCCCCAGCAGCAGCAGCAGCAGCAGAAC AGCGGGCCTTCCTTCATGCAAGGATGCCTGGCCGCACTTTGTTGTTGTTGTCTCCTGGAT GCCTGCTTCTGAGAGTAGCGACCACAGTTCCATCCTCGTGCCCGGGGAAATCGGACTGAT CAATTGTGCCTTGTTACCAAAATGCTACTAGCCTCCATGTTTTGGGCCCTATCACATTTT TCTACTACTTGGTTTGTAAACCTCCACATTGGGATTAATTATTTGGTTGGTTTGGATGTG AAAACTACCTTTCTAATTGTTACTGATCTATCTTTATTTTCTCCTTGCTTGAGAAATAAA AAAAGATACGATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_4695 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |