- Probe CUST_22148_PI390587928
- Source Contig U35_21705
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22148_PI390587928 | Hv_44K_v2 | AATGAGGTATATGTGCTCAAAAAGACATGCCATCAAGCTTTTTCATGTTATTGCTGAACA | 632 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.184 | 1.276 | 1.273 | 0.960 | 0.297 | 0.419 |
| Raw | 272.774 | 454.275 | 409.863 | 500.122 | 52.651 | 79.708 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76117.1 | 2680 | 2e-24 | 181 - 240 | 100 | 60 / 60 | minus | ABC16903 ABC46371 |
| MLOC | MLOC_76117.2 | 2004 | 2e-24 | 181 - 240 | 100 | 60 / 60 | minus | ABC16903 ABC46371 |
| JLOC1 | JLOC1_50764.6 | 1979 | 8e-25 | 1642 - 1701 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50764.5 | 1995 | 8e-25 | 1658 - 1717 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50764.4 | 1986 | 8e-25 | 1649 - 1708 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50764.3 | 1427 | 8e-25 | 1090 - 1149 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50764.2 | 2102 | 8e-25 | 1765 - 1824 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50764.1 | 2094 | 8e-25 | 1757 - 1816 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16903 | 740 | 3e-25 | 49 - 108 | 100 | 60 / 60 | minus | ABC16903 |
| Harvest35 | U35_21705 | 749 | 3e-25 | 633 - 692 | 100 | 60 / 60 | plus |
Contig Sequence (749 bp)
>U35_21705 749 Hv_44K_v2 TTTTTACACGTCATGATATTATGCTCTAATTTCTACTGGGCTACTTTTACATTGAAAATT CATTGTACGAAAGTTATTTACCTAATTTCTCAAAACATGGTAATTTTCTTAGCAATGTTA TTCTCCTTTGCATAGTGAATTAAAAGGTCATCTCCACACTGAAAGGAAGTTGATGATGAA GCTTCCATCACATTTCCCCTTAGAGCCTGCATGACACATGTATTTCAGTTTCTTGAAGTA GATAACATTGACCTTTTTTTTGAGGTCCTACAAAACTATGCCATCATTAAATCAGTGCTT GTTTTGTTCAACATTGACGATGTTAGCTAAGTGGATTTTGAGCACCATTCTACTCATTCC AAAAGTATGCAGGCCACACGAGGAATGATATAAGAAAGATGCTCTCAAACGGAATCTCGG TAGTGGGAGATGCATGGAAGAGGAAATCTAAGATTGACCTAAACAAAAATTGTAGGTAGG TGTATGACGACTGCAACTTTCCAAGGTTGCAGTCTTGTCCAAAATTTCAATTGTAAAAGC TCATACATAAGAAATGGGTAGAAGGGTAGAAGTCTGATATCTATTGGTCAACAGGCCCTT TATTTGTGAAGCAAATAAAGGATAAGAAGGTGAATGAGGTATATGTGCTCAAAAAGACAT GCCATCAAGCTTTTTCATGTTATTGCTGAACATTTTTTTCTATAGTTCAAATGCTAATGA AATTTTAGTTTTTCTAAAAAAAAAAAAAA
Homology of Contig U35_21705 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |