barSeed - Barley Seed Development Database

Probe CUST_22143_PI390587928

Source Contig U35_21710

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22143_PI390587928	Hv_44K_v2	GATTGGGCCATTCATGAGTCTAAGCGTCGCTTGATTGACGAGCAGATGAAAATGTTAAGG	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354901	1067	2e-24	646 - 705	100	60 / 60	plus	None
MLOC	MLOC_44057.1	1345	2e-24	665 - 724	100	60 / 60	plus	None
JLOC1	JLOC1_28514.1	1434	8e-25	676 - 735	100	60 / 60	plus
Harvest21	ABC18259	636	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_21710	640	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_21710 640 Hv_44K_v2
AAACATAGTTTCAGAACTCTGTACCCAAGGTGCAGGCGCGACAGGCGCCTCCACGCGGCG
GCGAACATGGCCGCGGCCCTCCGCCCCCTGCTCCGCCGGCACGCAGTTCTGGCGCCATCT
CCGATGCTGCGCTCACTATTCCCCTCGCCATACTCCAAGGCCGCCGCCACCGCCGCCGCC
ACCGCCGCCGCCGCCAGACCCCCATCCGTGTGCCACGCGCCCCTGCCGCCTCCCCTTCTG
AGGGAGGTTACTCCAAGAAGGGCTCCTCCAATTCCAAAGGGTGAACCACGCCGCTGCACT
GCTGTTCAAAGTACCTTGAGTGACAGTACAAAGTCGTTGCTGGATAAACTGAAGGATCTC
AAGGACAGTAAGAAGTCACTGGAAGACATGAGCAAGAATGTTAAGGAGCGTATGGAAATG
ATAAAGAAAGCGGTGCATGACGCTAGGGTTGCTACTGCTATGTTTAGGGTAAGGCTGGAT
GACCTTAAGAAACTTCATGACAAAATACGTGATGGCCGAGAGGATTCTGCCAAAATGAAT
GCAATATACCGCAGATTGGAGGATGAATATGACAGAGATTGGGCCATTCATGAGTCTAAG
CGTCGCTTGATTGACGAGCAGATGAAAATGTTAAGGAAGG

Homology of Contig U35_21710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None