barSeed - Barley Seed Development Database

Probe CUST_22142_PI390587928

Source Contig U35_21711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22142_PI390587928	Hv_44K_v2	GCTTGCATCAAGATGCAGATGGCCCTTCATTCTTTTTCTCCGTCAATGTATGTAGTTCCC	1292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57109.1	4593	2e-24	4417 - 4476	100	60 / 60	plus	ABC18284
JLOC1	JLOC1_36965.1	3513	8e-25	3284 - 3343	100	60 / 60	plus
Harvest21	ABC18284	1382	8e-21	1296 - 1354	97	57 / 59	plus	ABC18284
Harvest35	U35_21711	1380	3e-25	1293 - 1352	100	60 / 60	plus

Contig Sequence (1380 bp)

>U35_21711 1380 Hv_44K_v2
CATCTGAAGAGAGATGTCATCGTTTCGGAAGGCGTGCAAGCTGCTTTGACGACAGTGGTC
TCTGGAGATAATAGAAATTCAGTTCACACAGAATCAGATTCTCTTGGTATTTTACTTGGA
GCTTTAGCAGAAGAATCTATTCTATCAGACAATCCTGGGAAAGATGAGGTTGACGATGCT
TCCTTGACATTGTTGACGCTGGCTAGCAATGACCAGTCTGCAGATGAGGTTGCACACAAT
GAAGTTATAGAGACGCCTAGCTCTTCTGTTGGCGCATCCCTTTCATGTAAGGGGCGGACT
TTGTCAAATTTGGCATCTTATAGATCGCTTGGGATTCAGAACCCAGACAAACAAGAATAT
GGTGACGAAGTTGGTGTCTGGAGCTGCCAGGGTTTGAAGAACGGCAGAGGAATACGTAGT
TCAGCAAACGGTGTGTCAGAAACAAGCAAAAATTCAGGTGCACCAAAAACTTATCAACCA
GATCTATTGTCTAGAAGCATTGGAAGCTCAAAAAGAACAAGCATTATATGCTATGTCAGA
CGCAAGCATCGGCGCAAAAGAAAGAGGGGATCTGAGCCAAGTGCCAGTAGTTCACAAAGT
CTTGGGAGCTTTGCCCGCGCCCCATGTGAGAGCCTGAGACCCAGGAGGAAAACTGCAGTA
ATCGAAGAGGCGGCAGAGCAGACTGAAATCGCAAAACCTCTCGCTGCCGCGACCAAGGGC
AAGAGGTCCAAGGTGGTGGAGTTATTTCAGTGCGAGATTGATTACTGTGACATGACATTT
GAGAGCAAAGAGGACCTCCGTGCTCATGAGCGCAACATCTGCACCGATGAGTCGTGCGGC
AAGCGCTTCCAGTCGCACAAGTACCTGAAGCGCCATCAGTGCGTGCACCGCGACGAGAGG
CCGTTCAAGTGCCCCTGGGCCGGCTGCGGGATGACCTTCAAGTGGCTGTGGGCGCAGACT
GAACACATTAGAGTCCACACGGGAGAGCGCCCCTACGAGTGCGCAGTCCCTGACTGCGGG
CAGACGTTTAGGTACGTCTCGGACTACAGTCGGCACCGGAGGAAGTTTAATCATTACTGA
TTGGTCGTCGCAGCACTGCTGGGGGGCAAAGGCTCCTCCTCGGGTGGTGCTGCTTTGTGT
TATATAAGGTACGTCCGTCCTTGTTTGTTGTAGCAGGCTAGCAGCTCACGTATTTAATTA
ACCGCCAAACGGCTGGTAGTCTAGTGTTAATCCCCTTGGTTAACAATGTGCCGAGTTTAG
TCAGGAAGTAGAGATAGTTTGGGGGCTAAAAGGCTTGCATCAAGATGCAGATGGCCCTTC
ATTCTTTTTCTCCGTCAATGTATGTAGTTCCCTTGNATAAAGTTTATTTATCAATGTATC

Homology of Contig U35_21711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g05690.1	667	8e-88	protein\|ZOS3-03 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g74997.1	1497	2e-136
Arabidopsis v10	None