barSeed - Barley Seed Development Database

Probe CUST_22140_PI390587928

Source Contig U35_21713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22140_PI390587928	Hv_44K_v2	ATTATACGGGAATTGATAAGCTCATCTCAGATCTGTTCACGGCTACACGCGGAGTTTGCA	560	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.602	2.917	2.263	0.673	0.118	0.085
Raw	504.748	1479.990	991.145	464.256	30.076	23.714

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356012	1262	2e-24	1195 - 1254	100	60 / 60	plus	None
MLOC	MLOC_78414.1	914	2e-24	220 - 279	100	60 / 60	minus	None
JLOC1	JLOC1_52262.1	1031	8e-25	220 - 279	100	60 / 60	minus
Harvest21	ABC24224	613	8e-21	562 - 613	100	52 / 52	plus
Harvest35	U35_21713	667	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_21713 667 Hv_44K_v2
GAAAGACAGCAAGGTGTCCCTGGCTGGCAAGGTGCGCGGCAGCCTCCCCCACGCCAACTC
CACGGTGGACGAGCTCCTCCGCGTGTTCGCAGCCAAGGGCCTGGGGGCCGCCGACCTGGT
GGCACTGTCCGGCGCGCACACCATCGGCTTCGCGCACTGCGCCCATTTCCTGGGCCGCCT
CTACGACTTCCGCGGCACCCGGCGGCCGGACCCCTTCATGGACGCGCGGCTCGTGAAGGC
GCTGCGCATGACCTGCCCCTACACCGGCGGCAGCGCCCGCGCGGTGGTGCCGTTCGACGT
GAGCACGCCCTTCCAGTTCGACCACGCCTACTACGCCAACCTGCAGGCCAGGCTGGGCGT
CCTGGGCTCCGACCAGGCCCTGTTCCTGGACGCGCGGACCAGGCCGCTCGTGCTGGAGCT
CGGCGCCGACAAGGCCCGCTTCTTCCGGGCCTTCGTCGCCAGCATGGACAGGATGGGCTC
CATCCGGGTCAAGAAGGGCAAGAAGGGGGAGGTCAGGAAAATCTGTAGCCACCACCTGTA
GATGATGGTCGGTTGTTATTATTATACGGGAATTGATAAGCTCATCTCAGATCTGTTCAC
GGCTACACGCGGAGTTTGCACAGAGCTCACAAGGGATTTCGTTCCTCTTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_21713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g46050.1	368	5e-98
Arabidopsis v10	AT2G34060.1	346	3e-62	Peroxidase superfamily protein \| chr2:14384914-14386530 FORWARD LENGTH=346