- Probe CUST_22135_PI390587928
- Source Contig U35_21718
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22135_PI390587928 | Hv_44K_v2 | TGAACTCATTGATCCAGTCTATAAGATGAACTATGTATGTGGTGTGACCTTCTCTCTAAA | 511 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.441 | 1.461 | 1.061 | 0.706 | 0.239 | 0.233 |
| Raw | 787.658 | 1228.859 | 791.604 | 819.491 | 98.993 | 105.370 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22345.1 | 1690 | 2e-23 | 292 - 349 | 100 | 58 / 58 | minus | ABC17852 ABC49945 |
| MLOC | AK370348 | 1990 | 3e-21 | 1936 - 1989 | 100 | 54 / 54 | plus | ABC17852 ABC49945 |
| JLOC1 | JLOC1_15491.1 | 846 | 1e-23 | 197 - 254 | 100 | 58 / 58 | minus | |
| Harvest35 | U35_21718 | 585 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_21718 585 Hv_44K_v2 TCCCCCACCACAGCGGAGAGCCACTTCGGTGCGGCGGCCGCATTGCAGCTCTGGGAGGGG TTCAGGCACTCCGACATGAAGGAGAAGGGCAAGAACTGATCAATGGCTGTGCAATGCAGC GCTTCTTTTGGATGGAAGTAAAGACGGCCAATCATCACCCCATATTCCTGTGAGCTCCAT CCATTGCTTGAGACTTCCATAAGTGCATTGGGGGATGATTCCCTGCGCTCTTAGAAGCAG ACCATCATTTGGACATCTACCATGGTCACCGAAGAACCTCATCATCGTTACTCAGATGAT CGTGTGCTTTCTTTTTACTCCATGTTATATTAATCTTGTTTGTGGAGGTGAGGGTTCCCG AGCAAAAGCTTGCTAGAGTGCCCTTTCCATGCTTTGCGTTCTAGAACTTTGTCAATGGAT GCATGTGCCCTGAATCGGCAGCTCTTTTGACATTGTTGGGATGAGTTATGCCCTGTCAAT TTTTCTTGTTCTCCGTTGTGTGTTGTGTGACTGAACTCATTGATCCAGTCTATAAGATGA ACTATGTATGTGGTGTGACCTTCTCTCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_21718 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |