barSeed - Barley Seed Development Database

Probe CUST_22125_PI390587928

Source Contig U35_14758

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22125_PI390587928	Hv_44K_v2	TCTTTGTGCAGGTTTTAAAATTGGCCTTAATTTTCTATTTCGTGTTTAGGTTGGTTCCTC	2060	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359072	2141	2e-24	2048 - 2107	100	60 / 60	plus	ABC01956 ABC01958 ABC49606 ABC49950
JLOC1	JLOC1_50553.1	2124	8e-25	1801 - 1860	100	60 / 60	plus
Harvest21	ABC01957	2134	1e-24	2022 - 2080	100	59 / 59	plus
Harvest35	U35_14758	2174	3e-25	2061 - 2120	100	60 / 60	plus

Contig Sequence (2174 bp)

>U35_14758 2174 Hv_44K_v2
TCGAGCACTGTTGGCCTAGCTCCTCCCCTCTCCCCCCTCCCCAACCAGCGGTGCCGCCGC
ACAAAGTCCAACCCTAGATCCAGCCCCGATCCGCGGCCATGGCGACGCGCCGGGCCCTCT
CCTCGCTCCTCCGATCGGCGTCCCGCGCCCGCGCGGCCTCCCCGTCGCCGCGCCCGCGCC
CGGCGCCGCTCCACCGCCCGTCCCCGGCCGGCTACCTCTTCAACCGCGCCGCCGCCTACG
CCTCCGCCGCCGCGGCCGAGGCCCCGGCCCCGGCCGACAAGCTGCCCCCCACCTCCGACA
AGTACGTCGGCGCCAAGATCACCGACGAGTTCACCGGCGCCGGCTCCGTCGGCCAGGTCT
GCCAGGTCATCGGCGCCGTCGTCGACGTGCGCTTCGACGAGGGCCTCCCGCCCATCCTCA
CCGCGCTCGAGGTGCTCGACAACAGCATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCG
GCGAGAACGTCGTGCGCACCATCGCCATGGACGGGACCGAGGGGCTCGTCCGCGGCCAGA
AGGTCCTCAACACCGGATCCCCCATCACTGTTCCTGTTGGGAGGGCCACCCTTGGACGTA
TCATTAACGTTATTGGTGAGCCAATTGACCACAAGGGTGACATAAAGACACACGACTATC
TTCCTATTCATCGTGAGGCCCCTGCTTTTGTTGAGCAAGCCACAGAGCAGCAAATTCTTG
TTACTGGAATTAAGGTTGTCGATTTGCTTGCACCATACCAAAGGGGTGGGAAAATTGGTC
TCTTCGGTGGTGCAGGAGTGGGTAAAACTGTTCTTATCATGGAGTTGATCAACAATGTTG
CCAAGGCCCATGGTGGTTTCTCTGTGTTCGCTGGTGTCGGAGAACGTACCCGTGAAGGTA
ATGACCTGTACCGGGAAATGATTGAAAGTGGTGTCATCAAGCTTGATGATAAGCAGAGCG
AAAGCAAGTGCGCTCTTGTCTACGGGCAGATGAACGAGCCCCCGGGTGCTCGTGCTCGTG
TTGGTCTGACTGGTTTAACTGTTGCTGAGCATTTCCGTGATGCTGAAGGACAAGATGTGC
TTCTGTTTATTGACAACATTTTCCGTTTCACCCAGGCAAACTCTGAGGTGTCTGCTCTCC
TTGGACGTATTCCATCTGCTGTGGGGTACCAACCAACTCTTGCTACTGATCTTGGAGGAC
TGCAAGAGCGGATTACGACGACAAAGAAGGGTTCTATTACATCTGTCCAGGCTATTTATG
TGCCTGCTGATGATTTGACGGATCCTGCTCCTGCTACCACCTTTGCCCATCTTGACGCTA
CTACTGTGTTGTCACGATCGATTTCTGAGCTGGGCATTTACCCTGCTGTCGATCCTTTGG
ACTCGACATCAAGAATGCTTTCTCCCCACGTTCTGGGTATGGATCACTACAACACTGCCC
GTGGTGTGCAGAAGGTTCTTCAGAACTACAAGAATCTTCAGGATATCATTGCCATTTTGG
GTATGGATGAGCTCAGTGAGGATGATAAGTTGACGGTTGCTCGTGCAAGGAAGATCCAGC
GGTTCCTGAGCCAGCCCTTCCATGTTGCCGAAGTTTTCACTGGTGCTCCAGGGAAGTACG
TGGATCTAAAGGAGGGTGTTCAAAGTTTCCAGGGTGTGTTGGATGGCAAGTACGATGACC
TCTCGGAGCAGGCGTTCTACATGGTTGGAGGCATCGACGAAGTCATGGCCAAGGCGGAGA
AGATCGCCAAGGAGAATGCTTGATGACGAGGTGTTACCACCACCCTGTACAAGTTAATTT
TTTTGGATTTCAGCTGTTCGCCCGAGACTTGCTCACGAGCAGGAGCGTGCCAGCTCCTGC
TGAGGGATCCTTGTTTTTGTTCGTTTTTACTCCAATTTACCCGCAATAAGCAACTGCAGT
GACATTGGTTTAGTCTGCACAACAGCAACACTACTCTTGGCTTGGAAAAAACTTTGTGCC
CTTTGTAATGCAGATCCACAGGTCATGAATTGGTTTAGTTTATTAAAAAAAAAAAAAAAA
AATTGTTGTTGGCGAAGCTGTCTTTGTGCAGGTTTTAAAATTGGCCTTAATTTTCTATTT
CGTGTTTAGGTTGGTTCCTCTTTGAAACATATAGAATAATAAAATCAACATGTCAAAAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g49190.1	558	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi2g46790.1	552
Arabidopsis v10	AT5G08690.1	556	ATP synthase alpha/beta family protein \| chr5:2825739-2828352 FORWARD LENGTH=556