barSeed - Barley Seed Development Database

Probe CUST_22120_PI390587928

Source Contig U35_26733

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22120_PI390587928	Hv_44K_v2	ATGTTGTTTCTTTAGTTGCTTCGATGCATCGGTGATGCATCAAGAGATTGTAATAGAGCA	671	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.201	0.194	2.426	3.683	1.282	0.912
Raw	2.568	5.280	85.993	193.060	24.562	18.863

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58995.6	1649	2e-24	1536 - 1595	100	60 / 60	plus	ABC24962
MLOC	MLOC_58995.8	716	2e-24	632 - 691	100	60 / 60	plus	ABC24962
JLOC1	JLOC1_38360.2	2060	8e-25	1956 - 2015	100	60 / 60	plus
JLOC1	JLOC1_38360.1	1833	8e-25	1729 - 1788	100	60 / 60	plus
Harvest21	ABC24962	773	3e-25	43 - 102	100	60 / 60	minus	ABC24962
Harvest35	U35_26733	773	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (773 bp)

>U35_26733 773 Hv_44K_v2
GCGATTTGAGGGGGACAGGCTACATCGAGAAAGAAGAGCTTCGGGAGTTGGTGGTGGCAC
TCCTCGACGAGTCCGACCTGTGCCTCTCCGATAGCGCCGTTGAGGAGATCGTCGACAATA
CGTTCAGTCAAGCAGACTCGAATGGCGATGACAGGATAGACCCCAAGGAGTGGGAGGAGT
TCGTCAAGAAGAACCCAGCATCGCTCAGGAACATGTCACTGCCCTATCTTCAGGACATTA
CGACGGCGTTTCCGAGCTTCGTGATGCATTCGGAAGTCGACGATTACAGCGGAATCAGCA
AATAATAACTTGCCTTGATGCCTTATGATCTGTCCCGGGAGGCCATGCGTTCAGAAGTGC
GTGAGCTGCACCTCGAAAATCCGGAGCTCGAACGGGGGGAGAAAACACGGGAATCAATCT
GGGAGCAGCTGGTGAGCTTGAGACGATGACCAGATAGACAACGACTTCTTGTTGATGCGA
GATGGGCGTCAGACTATGAGAAAGGGGCTGTGTACGGTGTACCTACGTCAAGTGTGCATA
GAGGTTGTCGAAACACGGAGCAGTGACGAGCGGTTTTGGTCATTTTGGCTGTTGGGCACT
GTTACTAGCTTCGTATCTTTTGGCTTATGAGGGGCAACCTCCTGTAGGTATGGTAAAATG
CCAGAGGATGTATGTTGTTTCTTTAGTTGCTTCGATGCATCGGTGATGCATCAAGAGATT
GTAATAGAGCANCAATATGATGTATCTCTTCCTTCCTAAATAAAAGTCTTTTA

Homology of Contig U35_26733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None