barSeed - Barley Seed Development Database

Probe CUST_22118_PI390587928

Source Contig U35_26736

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22118_PI390587928	Hv_44K_v2	GTTCCATTTGCCCGTTACGTTGCCATGAATAACATAAGTGCCATAAAGAGATACCAGATA	435	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.915	1.242	1.121	0.698	0.388	0.287
Raw	628.822	540.220	510.815	446.836	95.509	80.369

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14915.1	3408	2e-24	1667 - 1726	100	60 / 60	plus	ABC17394
MLOC	MLOC_14915.2	2936	2e-24	1640 - 1699	100	60 / 60	plus	ABC17394
JLOC1	JLOC1_10193.1	2536	8e-25	1161 - 1220	100	60 / 60	plus
Harvest21	ABC22430	497	3e-25	436 - 495	100	60 / 60	plus
Harvest35	U35_26736	498	3e-25	436 - 495	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_26736 498 Hv_44K_v2
GCGTTGGGGAAAGGAACATCTGCTGTACTTGCTCTGCTTAGGGAGCATGCTACAGATGGA
AAAACCATTCCTTGTGTGAATTCTGCGTTGATTGCAGATTGGGGAATTGAGCTGTCTCTG
TTGTTTGATCCTAAGTGCCCCAAATTGGAGTTCCTTGTGGAGAAAATCAAGGAGATTGTG
GAGAGCAATGAAGTGGGAAGATTGCCAAAAATTCCCAAGGGAACACGTGACTTTGGGAGA
GAGCAAATGGCCATAAGGGAGCGTGCGTTTTCAATAATTACAAGTGTATTTAAGATGCAC
GGTGGTGTTGCACTTGATACCCCTGTATTCGAGTTGAGAGAAACCTTGATGGGCAAATAT
GGTGAAGACTCGAAGTTGGTATATGACCTTGCTGATCAGGGCGGCGAGCTTTGTTCATTG
CGCTATGATCTGACTGTTCCATTTGCCCGTTACGTTGCCATGAATAACATAAGTGCCATA
AAGAGATACCAGATAGCC

Homology of Contig U35_26736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05840.1	886	2e-88	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi2g35680.1	892	6e-97
Arabidopsis v10	AT3G02760.1	883	3e-63	Class II aaRS and biotin synthetases superfamily protein \| chr3:597588-600650 REVERSE LENGTH=883