- Probe CUST_22115_PI390587928
- Source Contig U35_26739
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22115_PI390587928 | Hv_44K_v2 | GTAACCATACATACATGTTCATTTGTGACCGGGGACCTGGATACTGTATTTTTCAAAAAA | 434 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.369 | 1.301 | 1.093 | 1.010 | 0.400 | 0.358 |
| Raw | 927.570 | 1342.909 | 1016.653 | 1471.321 | 205.019 | 200.178 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38571.1 | 2310 | 3e-21 | 755 - 808 | 100 | 54 / 54 | minus | ABC22589 |
| JLOC1 | JLOC1_25087.1 | 1696 | 2e-21 | 708 - 761 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC22589 | 505 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC22589 |
| Harvest35 | U35_26739 | 505 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_26739 505 Hv_44K_v2 GATATCAAGAGCAGTGGTGATAATGGGCAAGCGTCTGAGATGACGGCTGAAGAGCGCGAC CGACATCTAGACACGGTTGAGAGGCTCAAGAGAAGAAGCGAACGTTTCAAACTGCCCATG CCTGGCGAGAAGGAGGCACCCCAGAACAAAAAGGTTGATGCTGAAGTGCAGACTCCCCAG AATGAATCACCTGCTGCCGACGTTGAAGTGAAGCCTGAGCGGCCAGCTCGCAAGAGGAGA TGGACTGGGAGTTGATTGGAAATCGGAAACATATATCCTCATCTGAAGAAGTGTTGGCAC AGCTCATGGAAGCTGGAAACATATCCTCATCTGAAGAAGTCGCGGCACAGCTGGGCTCGC GCAATGCTTTTCTCTGTTACAACCGAAAGTTGAACTGATGTATGATTTCTACTGTATGAC TCAGATCTGTTACTGTAACCATACATACATGTTCATTTGTGACCGGGGACCTGGATACTG TATTTTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_26739 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |