- Probe CUST_22114_PI390587928
- Source Contig U35_38710
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22114_PI390587928 | Hv_44K_v2 | ATTGACCATTCACATTGTACAAAGAGAGAAAAAGTTTCACGGTGCTTGTTCATCTCCAAA | 14 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.346 | 1.564 | 1.181 | 0.752 | 0.316 | 0.445 |
| Raw | 588.532 | 1029.238 | 699.679 | 675.985 | 102.794 | 158.559 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC34606 | 482 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC34606 |
| Harvest35 | U35_38710 | 482 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (482 bp)
>U35_38710 482 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAGATGAACAAGCACCGTGAAACTTTTTCTCTCTTTGTACAA TGTGAATGGTCAATTGTGACACATGACAGGAAAATAAAAAAAGACAAATAACACATACTC CACAAAAGCCAGGAGCTAAATACATGAGCACCACCTGTCTGTTCTATACAAATGCACAAA TGAATGAAACCCATAATTCCAGCCCATCCAAACAAATGTCCATGTGGTACACAAATATGA TACTACTCATTGGTTAGCATCGATAGGTGCACCAGACCTTGCCTGTGATATCCGATTTGC GTAGATTGTTACCAGCCGCAGCTGTGTGCTACTAAGCCCCTCCAGATATGGCACAAATGC TTTCCCTAGCATGATGTAGATATCCACCAAGCAGAATACAACAGTCTTGCGAATATCTGG ACTCTGGTTACTGAAAGCATCAAAAAGTGCTGGTAAAAATGAAGGGAGTTGAGCCACCAA TT
Homology of Contig U35_38710 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |